Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi6g00064 ATGGCTCTTCTGAATGGTCCATTTGATTCTGTTAGGGACATTGTTAATGAGAGGAGGGAGGCTTTAAGGCTTAAACCAAGGACAAGGATTTTTCCTACTGAAAGTGAGGTGATACCTAGATTTGGTATCCAAGCTAAGAACTCTGAGGAGCTTCAAGAAACCAATGATTTCATTGGTCTTTTGACTACTGTGGGTGAGGAGAAGGAGTTCATAAAATTTGGGAGGCCTATTAGGGTGCTTGAAATTGAGCTCACAGATGATAAGGGTGTCATGAAGTGTTCATTATTCGGACACTTCATTAAAATGATGAAAAATTTCTTGGCTAATGGTGTGGATGACCTTGGTATTTTGGTCATTCAGTTTGCAAAGGTGAAGGAATACCTTGGTAAAGTTTCCCTTCATACTGTGAGTAACTCCACAAGGTTACTTTGGAATCCCCAGATTCCGGAGGTTATTTCATTTAAGGACAGTATTATGCAAAATGGTGTGGACATGCATGGCCCCCTAAAGATGATTGGACACAACTATTATTCACCAACTGAGGAGTTCCTTATCTATTTTCCTAGAAAGTCTATTGAGGATCTTCATATCACTAAAGAGGAAGGGCACTTTATATGCCTTGCAAGTGTTCAAGGGATTGTGAAAGATGACCATTGGTGGTATATGGCATTTACATGCCATAGATCTGTCAATTTAAATGATTCTGGTACTTATTATTGTTCTGGCTGTGAGGCATTTGTTTCGGATGCCACTCCTAGATATAAACTGAAGTTGGAAGTTAGGGACCATAGTGAAACTGCTCATTTCATACTGTTTGATTTTGAGGCTGCTTCTTTGTTATCCATGTCATGTGCCTCAATTGTTGGTGATGCCAAGGTTCCTACCCTTGATTATCCTTCTGAGTTGGACATGCTCATTGGCAAAGAGCTGTTGTTTAAGGTTGAAGTGAAAGTTGAGCGTGCCTTTAAATTTGATGATTCTTTTAAGATTCAGAGAACATGTGATGATGATGATATTATTCAGGAGTTCAAGAGTGATGGGTCAATCAGAACTCCTGAGAAGATGAAGCTGAAAGGACCTGTCAATGAGGTGTTTAATGTGGAAGATGAGCATCTTGGAGATGGAACAAAAGCCTCTGAAATTGTTCCTGTCATTGATCTGTACAATGAAGCTGAAATGAGTCCCCTCTCTGTTGAGGAGTCTTCCGGTGCTGCTGCATGTTTGGCTCCCCAGAAACATAAGGGTGGACCACGTACTGGGCGTGGTGCACTTGAAAGAAGAGCCTGCATCCAAAGGTGCTGA 1302 0.4109 MALLNGPFDSVRDIVNERREALRLKPRTRIFPTESEVIPRFGIQAKNSEELQETNDFIGLLTTVGEEKEFIKFGRPIRVLEIELTDDKGVMKCSLFGHFIKMMKNFLANGVDDLGILVIQFAKVKEYLGKVSLHTVSNSTRLLWNPQIPEVISFKDSIMQNGVDMHGPLKMIGHNYYSPTEEFLIYFPRKSIEDLHITKEEGHFICLASVQGIVKDDHWWYMAFTCHRSVNLNDSGTYYCSGCEAFVSDATPRYKLKLEVRDHSETAHFILFDFEAASLLSMSCASIVGDAKVPTLDYPSELDMLIGKELLFKVEVKVERAFKFDDSFKIQRTCDDDDIIQEFKSDGSIRTPEKMKLKGPVNEVFNVEDEHLGDGTKASEIVPVIDLYNEAEMSPLSVEESSGAAACLAPQKHKGGPRTGRGALERRACIQRC 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi6g00064 433 Gene3D - 38 166 IPR012340 -
Sebi6g00064 433 PANTHER OS03G0429900 PROTEIN 122 319 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi6g00064 433 SUPERFAMILY Nucleic acid-binding proteins 187 321 IPR012340 -
Sebi6g00064 433 SUPERFAMILY Nucleic acid-binding proteins 52 164 IPR012340 -
Sebi6g00064 433 CDD RPA1_DBD_B_like 56 157 - -
Sebi6g00064 433 Pfam Replication factor-A C terminal domain 206 320 IPR013955 -
Sebi6g00064 433 Gene3D - 185 337 IPR012340 -
Sebi6g00064 433 CDD RPA1_DBD_C 193 319 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi6g00064 Sebi-Chr6 3189571 3192014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi6g00064 22 284 Core DNA Replication Machinery Family AT5G45400 19.286 8.21e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi6g00064 - - lja:Lj6g3v0884310.1 296.589