Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi6g00061 ATGTCAGCACCGTCATCGTCTCCGACATCATCAGCCGCCGTGCCACCACCCAGTCCACCGCCACAGCTCTCTTCCCCTGCACCAGGCTGTTCAACTTCACCACTACCATCTCTGTTCCCACCTCTCTTGTCACCTTCAACACCACCACCACTGTTAACTCCTGCTGCTCCTTCACTGCCACCACAGTCTCCGGTGCCGGAAAGTTCACCACCGGTATCACTGCCCCCTGAAAATGCACCCTCTGAAGTGCCCCCTCTTAGGTCTTCTCCACCACCTGAATCAATCCCTCCTCAAAATTCTCCTCCTTCTCCTACACCTCTGAGTAGTGCACCACCACCACCTCCTCCTAGGATAGGTCCTCCTTATTCTCAATCTATCCCATCACCCACATTTAGATCGGCTCCACCACCTCCATCATCACAACATGTATCAAAAAATTCAAGCCCTGGAGGTAGTGGTGGCATTGGTTCTGGTGGTGCAGTAACTATTGGTGTAGTGGCTGGAGTTCTATTGCTTGGCTTCATTGGCATTGCTATCTGGTGCCTGAGCAGGCAAAAGAAAAGGGTGTCTGAGAATGGTAGTTTTGTCTTGCCATCCTCTCATTTCCCATCACCTGAATCAGATTTGTCCCTTTTGAAGACACATTCTTCTGCACCTCTTATACAAAGAGGTTCTGGCAGTGATAATGTGTATACACCATCAGGACTAGGCAACTCAAGGTCATGGTTTGCATATGATGAACTAATCAAGGCCACAAATGATTTTTCAACTGAAAACCTTTTGGGTGAGGGTGGATTTGGTTGTGTATATAAAGGATACCTTCTTGATGGGAGAGAGGTAGCAGTCAAACAGTTGAAAATTGATGGAGGTCAGGGTGAGAGAGAGTTCAAAGCTGAAGTGGAAATTATTAGTCGCATCCATCATCGTCATTTGGTTTCCTTGGTGGGATACTGCATTTCAGATAATAGAAGACTGCTTGTCTATGACTACGTCCCCAACAATACCCTTTATTTTCATCTTCACGGGGAAGATAGGCCAGTGTTAGACTGGGAAAACCGTGTTAAAATTGCTGCTGGTGCTGCTAGAGGAATAGCTTATCTCCATGAAGACTGCATTCCTCGGATTATTCACAGGGATATAAAGTCATCAAATATTCTTTTAGATTACAACTTTGAAGCTAGAGTCTCAGATTTTGGGCTGGCCAAATCAGCCCTTGATACAAATACACATGTAACCACACGTGTAGTGGGGACTTTTGGATATGTTGCCCCTGAGTATGTATCAAGTGGAAAATTGACTGAGAAGTCAGATGTATATTCTTTTGGAGTCATGCTTTTGGAGCTCATTACTGGACGGAAGCCAGTAGATATATCTCAACCAGTTGGAGAAGAGAGTCTAATAGAATGGGCTCGACCTCTGCTAAGTCATGCACTTGATAATGAGGAATTTGAGAGTTTGATAGATCCAAAGCTAGGAAAGAACTATATTGATAGTGAAATAGTTTGCATGATTGAAGTTGCTGCTGCTTGTGTGCAATATTCAGCTACCAAAAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGTTTATCTACTTCTGACTTAACAAATGGAATGAGATTTGGGGAAAGTGAGGCGTTTGATTTGGCACAGCAATCCGCAGAAATAAGATTATTCCGTAGGATGGCATTTGGTTGTCAAGATTATAGCTCGGATATTTTTAGCCAGATTAGTTTGAATACCTAA 1749 0.4437 MSAPSSSPTSSAAVPPPSPPPQLSSPAPGCSTSPLPSLFPPLLSPSTPPPLLTPAAPSLPPQSPVPESSPPVSLPPENAPSEVPPLRSSPPPESIPPQNSPPSPTPLSSAPPPPPPRIGPPYSQSIPSPTFRSAPPPPSSQHVSKNSSPGGSGGIGSGGAVTIGVVAGVLLLGFIGIAIWCLSRQKKRVSENGSFVLPSSHFPSPESDLSLLKTHSSAPLIQRGSGSDNVYTPSGLGNSRSWFAYDELIKATNDFSTENLLGEGGFGCVYKGYLLDGREVAVKQLKIDGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDNRRLLVYDYVPNNTLYFHLHGEDRPVLDWENRVKIAAGAARGIAYLHEDCIPRIIHRDIKSSNILLDYNFEARVSDFGLAKSALDTNTHVTTRVVGTFGYVAPEYVSSGKLTEKSDVYSFGVMLLELITGRKPVDISQPVGEESLIEWARPLLSHALDNEEFESLIDPKLGKNYIDSEIVCMIEVAAACVQYSATKRPRMGQVVRAFDSLSTSDLTNGMRFGESEAFDLAQQSAEIRLFRRMAFGCQDYSSDIFSQISLNT 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi6g00061 582 Gene3D Phosphorylase Kinase; domain 1 223 330 - -
Sebi6g00061 582 FunFam proline-rich receptor-like protein kinase PERK8 331 542 - -
Sebi6g00061 582 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 169 563 IPR047117 -
Sebi6g00061 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672|GO:0006468
Sebi6g00061 582 Pfam Protein tyrosine and serine/threonine kinase 257 527 IPR001245 GO:0004672|GO:0006468
Sebi6g00061 582 MobiDBLite consensus disorder prediction 10 123 - -
Sebi6g00061 582 FunFam Proline-rich receptor-like protein kinase PERK8 227 330 - -
Sebi6g00061 582 Gene3D Transferase(Phosphotransferase) domain 1 331 546 - -
Sebi6g00061 582 SUPERFAMILY Protein kinase-like (PK-like) 231 526 IPR011009 -
Sebi6g00061 582 PRINTS Proline rich extensin signature 8 29 - -
Sebi6g00061 582 PRINTS Proline rich extensin signature 63 80 - -
Sebi6g00061 582 PRINTS Proline rich extensin signature 34 50 - -
Sebi6g00061 582 PRINTS Proline rich extensin signature 81 106 - -
Sebi6g00061 582 MobiDBLite consensus disorder prediction 137 153 - -
Sebi6g00061 582 MobiDBLite consensus disorder prediction 1 154 - -
Sebi6g00061 582 ProSiteProfiles Protein kinase domain profile. 255 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi6g00061 582 ProSitePatterns Protein kinases ATP-binding region signature. 261 283 IPR017441 GO:0005524
Sebi6g00061 582 CDD STKc_IRAK 261 531 - -
Sebi6g00061 582 SMART serkin_6 255 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi6g00061 Sebi-Chr6 3060730 3064751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi6g00061 146 577 Trihelix Transcription Factor Family AT5G38560 65.914 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Sebi6g00061 Pkinase 3.5e-46 CL0016