LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi6g00061	ATGTCAGCACCGTCATCGTCTCCGACATCATCAGCCGCCGTGCCACCACCCAGTCCACCGCCACAGCTCTCTTCCCCTGCACCAGGCTGTTCAACTTCACCACTACCATCTCTGTTCCCACCTCTCTTGTCACCTTCAACACCACCACCACTGTTAACTCCTGCTGCTCCTTCACTGCCACCACAGTCTCCGGTGCCGGAAAGTTCACCACCGGTATCACTGCCCCCTGAAAATGCACCCTCTGAAGTGCCCCCTCTTAGGTCTTCTCCACCACCTGAATCAATCCCTCCTCAAAATTCTCCTCCTTCTCCTACACCTCTGAGTAGTGCACCACCACCACCTCCTCCTAGGATAGGTCCTCCTTATTCTCAATCTATCCCATCACCCACATTTAGATCGGCTCCACCACCTCCATCATCACAACATGTATCAAAAAATTCAAGCCCTGGAGGTAGTGGTGGCATTGGTTCTGGTGGTGCAGTAACTATTGGTGTAGTGGCTGGAGTTCTATTGCTTGGCTTCATTGGCATTGCTATCTGGTGCCTGAGCAGGCAAAAGAAAAGGGTGTCTGAGAATGGTAGTTTTGTCTTGCCATCCTCTCATTTCCCATCACCTGAATCAGATTTGTCCCTTTTGAAGACACATTCTTCTGCACCTCTTATACAAAGAGGTTCTGGCAGTGATAATGTGTATACACCATCAGGACTAGGCAACTCAAGGTCATGGTTTGCATATGATGAACTAATCAAGGCCACAAATGATTTTTCAACTGAAAACCTTTTGGGTGAGGGTGGATTTGGTTGTGTATATAAAGGATACCTTCTTGATGGGAGAGAGGTAGCAGTCAAACAGTTGAAAATTGATGGAGGTCAGGGTGAGAGAGAGTTCAAAGCTGAAGTGGAAATTATTAGTCGCATCCATCATCGTCATTTGGTTTCCTTGGTGGGATACTGCATTTCAGATAATAGAAGACTGCTTGTCTATGACTACGTCCCCAACAATACCCTTTATTTTCATCTTCACGGGGAAGATAGGCCAGTGTTAGACTGGGAAAACCGTGTTAAAATTGCTGCTGGTGCTGCTAGAGGAATAGCTTATCTCCATGAAGACTGCATTCCTCGGATTATTCACAGGGATATAAAGTCATCAAATATTCTTTTAGATTACAACTTTGAAGCTAGAGTCTCAGATTTTGGGCTGGCCAAATCAGCCCTTGATACAAATACACATGTAACCACACGTGTAGTGGGGACTTTTGGATATGTTGCCCCTGAGTATGTATCAAGTGGAAAATTGACTGAGAAGTCAGATGTATATTCTTTTGGAGTCATGCTTTTGGAGCTCATTACTGGACGGAAGCCAGTAGATATATCTCAACCAGTTGGAGAAGAGAGTCTAATAGAATGGGCTCGACCTCTGCTAAGTCATGCACTTGATAATGAGGAATTTGAGAGTTTGATAGATCCAAAGCTAGGAAAGAACTATATTGATAGTGAAATAGTTTGCATGATTGAAGTTGCTGCTGCTTGTGTGCAATATTCAGCTACCAAAAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGTTTATCTACTTCTGACTTAACAAATGGAATGAGATTTGGGGAAAGTGAGGCGTTTGATTTGGCACAGCAATCCGCAGAAATAAGATTATTCCGTAGGATGGCATTTGGTTGTCAAGATTATAGCTCGGATATTTTTAGCCAGATTAGTTTGAATACCTAA	1749	0.4437	MSAPSSSPTSSAAVPPPSPPPQLSSPAPGCSTSPLPSLFPPLLSPSTPPPLLTPAAPSLPPQSPVPESSPPVSLPPENAPSEVPPLRSSPPPESIPPQNSPPSPTPLSSAPPPPPPRIGPPYSQSIPSPTFRSAPPPPSSQHVSKNSSPGGSGGIGSGGAVTIGVVAGVLLLGFIGIAIWCLSRQKKRVSENGSFVLPSSHFPSPESDLSLLKTHSSAPLIQRGSGSDNVYTPSGLGNSRSWFAYDELIKATNDFSTENLLGEGGFGCVYKGYLLDGREVAVKQLKIDGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDNRRLLVYDYVPNNTLYFHLHGEDRPVLDWENRVKIAAGAARGIAYLHEDCIPRIIHRDIKSSNILLDYNFEARVSDFGLAKSALDTNTHVTTRVVGTFGYVAPEYVSSGKLTEKSDVYSFGVMLLELITGRKPVDISQPVGEESLIEWARPLLSHALDNEEFESLIDPKLGKNYIDSEIVCMIEVAAACVQYSATKRPRMGQVVRAFDSLSTSDLTNGMRFGESEAFDLAQQSAEIRLFRRMAFGCQDYSSDIFSQISLNT	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi6g00061	582	Gene3D	Phosphorylase Kinase; domain 1	223	330	-	-
	Sebi6g00061	582	FunFam	proline-rich receptor-like protein kinase PERK8	331	542	-	-
	Sebi6g00061	582	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	169	563	IPR047117	-
	Sebi6g00061	582	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	375	387	IPR008271	GO:0004672\|GO:0006468
	Sebi6g00061	582	Pfam	Protein tyrosine and serine/threonine kinase	257	527	IPR001245	GO:0004672\|GO:0006468
	Sebi6g00061	582	MobiDBLite	consensus disorder prediction	10	123	-	-
	Sebi6g00061	582	FunFam	Proline-rich receptor-like protein kinase PERK8	227	330	-	-
	Sebi6g00061	582	Gene3D	Transferase(Phosphotransferase) domain 1	331	546	-	-
	Sebi6g00061	582	SUPERFAMILY	Protein kinase-like (PK-like)	231	526	IPR011009	-
	Sebi6g00061	582	PRINTS	Proline rich extensin signature	8	29	-	-
	Sebi6g00061	582	PRINTS	Proline rich extensin signature	63	80	-	-
	Sebi6g00061	582	PRINTS	Proline rich extensin signature	34	50	-	-
	Sebi6g00061	582	PRINTS	Proline rich extensin signature	81	106	-	-
	Sebi6g00061	582	MobiDBLite	consensus disorder prediction	137	153	-	-
	Sebi6g00061	582	MobiDBLite	consensus disorder prediction	1	154	-	-
	Sebi6g00061	582	ProSiteProfiles	Protein kinase domain profile.	255	531	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi6g00061	582	ProSitePatterns	Protein kinases ATP-binding region signature.	261	283	IPR017441	GO:0005524
	Sebi6g00061	582	CDD	STKc_IRAK	261	531	-	-
	Sebi6g00061	582	SMART	serkin_6	255	532	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi6g00061	Sebi-Chr6	3060730	3064751	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi6g00061	146	577	Trihelix Transcription Factor Family	AT5G38560	65.914	0.0	590

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Sebi6g00061		Pkinase	3.5e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi6g00061	-		-	vun:114173712	694.886