Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi6g00060 ATGTATGAAGAAAGTGGTTGCTTTGATCCCAATGCAATGATGGGAACAACAACAGGCCCATCATCAGAAGACTGCTTCTCCCAAATCGTTTCAGAATCAGACCAACCACTTCAGGCACCTGCCACAGAGACCCACAACAGCTTTTCAGAGAATGTGTGTCTTTCTGTGGAAAACTTCTCCTACCCATATTCTTGTGGTGAAGATGCTATTAGTATTACTGCTACTTCTTCTACCCTCACAAATAGAGTTGCTGCTTCTGTTGCCACCGGAATGGAAATCACTGCACATCCCAACCAAATGGGTTTTCACATGGAAAATCCATACAATCATACCAATAACTTCAATACCAATTTGGTGGAAGAGGTCAATAACAATAACAATTGGGATACTTCAAAACTGCATAAGGTTTACCATAGTCAGCAATTTCCTTATCATCAACAAGATCAGCAATTTCCTTATCCCACAACAAAACCAGATCTTCTTAACCTTCTCCACTTTCCTAGAAGCCCACCTTCCCCATTTGGGAACTCCTCTCTATCTTTTGAAAACCCAAACCACAACACCACCAATCTTTCAAGACCCTCAAGCCATGCCACCTGGATTGGTAACTGCCCTATGGGGGCAGAAAGTACAAACGTTTCCTCTATTACCTATGACCCTTTGTTGCATTTGAACCTCCAAGCACCAACACAAGGTGCTGTACTTCATCCTCTACCCCATGGCTACACCATGGCTTCAAGAAATGATTTTGTCTTTGGTGAAGGGGATGACATAGAAGGTAGTGGGGTTGCTTACCAAGATGGAGATGGGAGAGATTTTGGTAATGGAGTTTTAGAGTTCACCCAAGATGTGGCTTATGTTGGTAAAAAGAGAGGAGGGAAAAGGGTCAAGCAATTTACCAGTACAAGTGAGAAACAAAGGAGAGTGGATTTGAGTAGCAAGTTTGATGCCTTAAAAGAACTCATCCCAAACCCTTCAAGGAGTGATAGAGCATCAGTGGTGGGAGATGCTATTGACTATATCAAAGAGCTTCTAAGGACAGTGAACGAGCTCAAATTATTGGCAGAGAAGAAAAGGCAAGAGAAACAAAGGATCAAGAGGCACAAGGTTGAAGAAGGTGGCTTGCAAGAAGACTACAACTTGAAGCTGGTTGGAATTGGCAACCCAGATGAACAATCCTACAATGAAAGCATTAGAAGCTCTTGGATCCAAAGGAAATCCAAAGACACTGAGGTTGATGTACGCATTATTGACAACGAGGTAATAATAAAGCTTGTTCAAAGGAAGAAGATCAATTGCTTGGTATATGCTTCACAAGTTCTGAATGAACTTAAGCTGGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTTTATGTTCAATAGCAAGATATGTGAAGGTTCCTCAGTTTATGCAAGTGCCATAGCCAACAAACTTATTGAGGTAATGGACAGAAGTTTGGCAGCAGCATGA 1485 0.4222 MYEESGCFDPNAMMGTTTGPSSEDCFSQIVSESDQPLQAPATETHNSFSENVCLSVENFSYPYSCGEDAISITATSSTLTNRVAASVATGMEITAHPNQMGFHMENPYNHTNNFNTNLVEEVNNNNNWDTSKLHKVYHSQQFPYHQQDQQFPYPTTKPDLLNLLHFPRSPPSPFGNSSLSFENPNHNTTNLSRPSSHATWIGNCPMGAESTNVSSITYDPLLHLNLQAPTQGAVLHPLPHGYTMASRNDFVFGEGDDIEGSGVAYQDGDGRDFGNGVLEFTQDVAYVGKKRGGKRVKQFTSTSEKQRRVDLSSKFDALKELIPNPSRSDRASVVGDAIDYIKELLRTVNELKLLAEKKRQEKQRIKRHKVEEGGLQEDYNLKLVGIGNPDEQSYNESIRSSWIQRKSKDTEVDVRIIDNEVIIKLVQRKKINCLVYASQVLNELKLDLQHVAGGHIGDFCSFMFNSKICEGSSVYASAIANKLIEVMDRSLAAA 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi6g00060 494 Coils Coil 341 371 - -
Sebi6g00060 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 363 IPR036638 GO:0046983
Sebi6g00060 494 CDD bHLH_AtMYC1_like 300 359 IPR045896 -
Sebi6g00060 494 Gene3D - 291 354 IPR036638 GO:0046983
Sebi6g00060 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
Sebi6g00060 494 PANTHER TRANSCRIPTION FACTOR BHLH91 1 493 IPR045895 GO:0006355|GO:0048658
Sebi6g00060 494 SMART finulus 301 350 IPR011598 GO:0046983
Sebi6g00060 494 MobiDBLite consensus disorder prediction 1 24 - -
Sebi6g00060 494 Pfam Helix-loop-helix DNA-binding domain 302 344 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi6g00060 Sebi-Chr6 2980335 2982068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi6g00060 1 494 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 34.047 1.84e-73 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi6g00060 HLH 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi6g00060 - - vra:106767981 447.973