LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi6g00047	ATGCCTCACTCACTCACTGCCCCTGTTGTGTTTTATGGGGTTCTGGGAAGTGAAGTTGAGAGCTTTGAGCTCTTTCTCCCTTACCCCTTTATTTATTACCTCTCTCAAACTGTCCTTGGAAACCATGGTTTTCTGCATCAACTTTTTTTGGATAGGAGCGTTTCGTTTCTTCAGAATGGTAGCATAGTGTTTTTCTTTGGTAAAATGAAGTACGTGTTGGTGACAGGTGGAGTTGTTAGTGGACTTGGGAAAGGAGTCACTGCCAGCAGCATTGGAGTACTCCTCAAGGCTTGTGGCTTTAGAGTTACTTCTATCAAGATTGATCCCTATCTGAACACTGATGCAGGGACAATGTCTCCTTTTGAGCATGGGGAGGTGTTTGTCTTGGATGATGGCGGTGAGGTTGACCTTGATCTTGGAAACTATGAGCGAGCTCCACACTCTTCTGATATGAACTCACAACAACATAAGAGAAAATGTTCTGCCAAAGGTGATGAGGGCAGCTTGAAATGTGGGAGCAGTGCTAGATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATTAAGGTGCCTGCCATCAGCAACAAACTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAGTACGGGCAGAAGCCAATCAAGGGCTCTCCTCACCCTAGCCAAACTAGAGATGCTTCATTGAAGAATGGACACCCTGATGATGAGAAAAGTGACAAGATTCTCGAAATAGATATATACTTGGAAGCCACACTTCAAGTCTCACGACAGTAG	786	0.444	MPHSLTAPVVFYGVLGSEVESFELFLPYPFIYYLSQTVLGNHGFLHQLFLDRSVSFLQNGSIVFFFGKMKYVLVTGGVVSGLGKGVTASSIGVLLKACGFRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERAPHSSDMNSQQHKRKCSAKGDEGSLKCGSSARCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPSQTRDASLKNGHPDDEKSDKILEIDIYLEATLQVSRQ	261

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi6g00047	261	SMART	WRKY_cls	204	238	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Sebi6g00047	261	Pfam	CTP synthase N-terminus	70	145	IPR017456	GO:0003883\|GO:0006221
	Sebi6g00047	261	ProSiteProfiles	WRKY domain profile.	199	224	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Sebi6g00047	261	Pfam	Plant zinc cluster domain	157	202	IPR018872	-
	Sebi6g00047	261	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	69	147	IPR027417	-
	Sebi6g00047	261	PANTHER	CTP SYNTHASE	69	145	IPR004468	GO:0003883\|GO:0006221
	Sebi6g00047	261	MobiDBLite	consensus disorder prediction	150	165	-	-
	Sebi6g00047	261	MobiDBLite	consensus disorder prediction	145	174	-	-
	Sebi6g00047	261	Gene3D	WRKY domain	183	236	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Sebi6g00047	261	MobiDBLite	consensus disorder prediction	206	244	-	-
	Sebi6g00047	261	Pfam	WRKY DNA -binding domain	206	225	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Sebi6g00047	261	SUPERFAMILY	WRKY DNA-binding domain	202	225	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Sebi6g00047	261	Gene3D	-	66	157	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi6g00047	Sebi-Chr6	2719566	2721764	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi6g00047	146	258	WRKY Transcription Factor Family	AT2G30590	63.158	1.30e-41	145

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Sebi6g00047		CTP_synth_N	5e-41	CL0023

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi6g00047	-		-	gmx:100170681	176.407