Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi6g00027 ATGGCGTGGTGGGAGCTTGGGAAGAAGTCTGTTTATGCATCAGCAGGATGCATTCCAGATTTCATCAACCACTCATATATGGAAACTGGTTTTTGTGGTGGGACTAAAGAATATGGAAGACGGTGTTTTCATGCTAGCCCACAAGTCTGGGCAAGAAGAGGTGATGAGCCGTTTGGTTTGAAGACCGCCCCAAAGAAGGAGAAGTATGTTAGAAGAGACAGTAAAAGCCAGCCACCAGTTGAAGCTCGATATGTCGCTCCTAAAATCTCAGCTACCAAATCTAATCGTGATAAAACAGTAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAACGTACTGGAAAATCAGTATCTTCTTTGCTGGATATCCTCTCAAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCCTCTCAGCATGGATATTGCAGAGCTTGCTGCAATGGAGGTTGGAGTCAATGTTAAGAGGCTACATTCAGCTGAAGGTGCAGAGATTTTACCACGTCCTGCAGTTGTAACAGTGATGGGACATGTTGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGTCAAACATCAGTGGCAGCCAAGGAGGCTGGTGGCATAACTCAGCATCTAGGTGCCTTTGTGGTGGCCATGCCATCAGGAGCATCAATCACATTTCTTGACACTCCTGGTCATGCTGCGTTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGTGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAAAGAGTAAAACTGCAGCTTGCTTCAGAGGGCTTACTGCTGGAGGAGATGGGTGGGGATGTTCAGGTTATTGAAGTTTCTGCAACTGAAAAAACCGGACTGGATAACCTAGAGGAAGCTTTACTCCTTCAGGCTGATTTGATGGATCTTAAAGCACGAATTGATGGGTCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACAAAGGACGGGGTCCTTTGGTAACTACTATAGTGAAGGCAGGGACTCTAGTTTGTGGTCAACATGTGGTTATAGGCTCAGAGTGGGGAAGAATAAGGGCGATCAAAGATACGGCAGGGAGGTTAACTCAACGAGCAACACCTGCAATGCCTGTTGAGATTGAAGGACTTCGAGGGCTGCCGATGGCTGGTGATGATGTTATTGTTGTCCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGAAAAGGAAATCTGAGGAGGACAGGCTTAGGAGAAAGATGATACAAGACAAGCCAACTACTTCAGATGATTCTGAGGAGGTTCCGCAGAGGGTTGAATTGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTCCAAGCTGTCACAGATGCATTGCGAACTTTAAATAGTTCTCAGGTTCTTGTGAATGTTGTCCATGTTGGTGTTGGGCCGATTTCTCAATCTGATGTGGACTTAGCACAAGCTTGTGGTGCATGCATAGTTGGATTCAATGTCAAGAGTCCACCTACTTCTCTTAGTCAGGCAGCAACTCGTGCTAGTATCAAGGTATTAACTTCAAAAGTTATGTTTAACCATATTGTGACTGTGGTGATTCTGCACCGTGTGATTTACCACCTGTTGGAGGATATAGGCAATTTGATAATAGAGAAGGCCCCTGGGACTTTTGAGACCCAGGTAGCTGGGAAGGCAGAAGTGCTGAATATCTTTGAGATCAAAGGGAGCAAGTCCAAGGGACCTGATGTGAAGATAGCTGGTTGTCGGGTTATTGATGGTTTTGTGACCAGGTCATCAACCCTGAGGCTTCTAAGGAGTGGAGAAGTCGTGTTTGAAGGGCTTTGTGCATCTCTTAAGCAGGAGAAGCAGGATGTGGATACTGTGAAGAAGGGAGGTGAGTGTGGACTAGTAATTAGTAACTGGTATGATTTCCAGATTGGAGACGTCATCCAGTGCTTGGAACAAGTTGTAAGGAAGCCCAAATTCGTTAAGTCCGAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2115 0.4534 MAWWELGKKSVYASAGCIPDFINHSYMETGFCGGTKEYGRRCFHASPQVWARRGDEPFGLKTAPKKEKYVRRDSKSQPPVEARYVAPKISATKSNRDKTVEIFEGMTLVELAKRTGKSVSSLLDILSNVGEKVESEFEPLSMDIAELAAMEVGVNVKRLHSAEGAEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHLGAFVVAMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQVIEVSATEKTGLDNLEEALLLQADLMDLKARIDGSAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVIGSEWGRIRAIKDTAGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKRKSEEDRLRRKMIQDKPTTSDDSEEVPQRVELPVIVKADVQGTVQAVTDALRTLNSSQVLVNVVHVGVGPISQSDVDLAQACGACIVGFNVKSPPTSLSQAATRASIKVLTSKVMFNHIVTVVILHRVIYHLLEDIGNLIIEKAPGTFETQVAGKAEVLNIFEIKGSKSKGPDVKIAGCRVIDGFVTRSSTLRLLRSGEVVFEGLCASLKQEKQDVDTVKKGGECGLVISNWYDFQIGDVIQCLEQVVRKPKFVKSESGAVRIEC 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi6g00027 704 CDD IF2_mtIF2_II 346 440 IPR044145 -
Sebi6g00027 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 338 IPR027417 -
Sebi6g00027 704 Hamap Translation initiation factor IF-2 [infB]. 8 690 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Sebi6g00027 704 Gene3D - 167 341 IPR027417 -
Sebi6g00027 704 MobiDBLite consensus disorder prediction 433 465 - -
Sebi6g00027 704 FunFam Translation initiation factor IF-2 166 341 - -
Sebi6g00027 704 Pfam Translation-initiation factor 2 463 558 IPR023115 -
Sebi6g00027 704 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 463 593 IPR036925 -
Sebi6g00027 704 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 76 697 IPR015760 -
Sebi6g00027 704 Gene3D - 466 585 IPR036925 -
Sebi6g00027 704 SUPERFAMILY Translation proteins 343 425 IPR009000 -
Sebi6g00027 704 FunFam Translation initiation factor IF-2 588 691 - -
Sebi6g00027 704 Gene3D Translation factors 587 689 - -
Sebi6g00027 704 NCBIfam small GTP-binding protein domain 172 325 IPR005225 GO:0005525
Sebi6g00027 704 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 169 339 IPR000795 GO:0003924|GO:0005525
Sebi6g00027 704 FunFam Translation initiation factor IF-2 466 587 - -
Sebi6g00027 704 CDD IF2_eIF5B 173 336 - -
Sebi6g00027 704 NCBIfam translation initiation factor IF-2 97 687 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Sebi6g00027 704 Gene3D Translation factors 342 458 - -
Sebi6g00027 704 Pfam Elongation factor Tu GTP binding domain 174 330 IPR000795 GO:0003924|GO:0005525
Sebi6g00027 704 SUPERFAMILY Translation proteins 588 689 IPR009000 -
Sebi6g00027 704 CDD mtIF2_IVc 593 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi6g00027 Sebi-Chr6 1804932 1810131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi6g00027 170 555 Eukaryotic Initiation Factors Gene Family AT1G21160 27.333 6.60e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi6g00027 K02519 - gmx:100790572 1103.58