Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi6g00023 ATGCACTTGACTATAAGTACATATTTGGATGGTGCATTAGAGTGCTCTGTTGAGGTGGATCTGGATGGTGCAGTCCCTGATGTTAAGGTGCATTTGGCTAAGGTGGAAAGGGATTGTAGGATTTTCCATCTCAACATGGATATGACCAACCATGAATCTGGGACCCCCATTGAGCTGGGATGTTCTTGCAACGATGATTTGGCTGCTACTCACAAACAATGTGCTGAGGCTTGGTTTAAGATCAAAGGCAACAAGAGATGGTGGAGGCTAGAGTTCCCTTGCCATACAGGGACCAGTGTGCTCACTTACTCATTCCTCTCAACAAATGCAGGCAAGCTGAGTTCTATCTCCCATGGAAGTGCGAGAACGAGCGCCACTCCTATGAGAAGTGCGAGTATGAGCTTGTCATGGAGAGGATGCTTCAGATGTAGAAGATCCGCAAGGAGGAGCGAGCTAAATCGAAACAACCCCTCTCCCAGGGCACTGTTCCCCTCATCCCCAAACCCGCCAATGCCTGATTCGATTCCTGTCCTCTTTCTCTCTGTAAGTCCCTCTCTCCTTTCAATTCATTTCATCTAG 579 0.4801 MHLTISTYLDGALECSVEVDLDGAVPDVKVHLAKVERDCRIFHLNMDMTNHESGTPIELGCSCNDDLAATHKQCAEAWFKIKGNKRWWRLEFPCHTGTSVLTYSFLSTNAGKLSSISHGSARTSATPMRSASMSLSWRGCFRCRRSARRSELNRNNPSPRALFPSSPNPPMPDSIPVLFLSVSPSLLSIHFI 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi6g00023 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 107 IPR013083 -
Sebi6g00023 192 SUPERFAMILY RING/U-box 37 88 - -
Sebi6g00023 192 Pfam RING-variant domain 39 84 IPR011016 GO:0008270
Sebi6g00023 192 PANTHER ZINC FINGER, RING-CH-TYPE 32 85 - -
Sebi6g00023 192 SMART ringv_2 38 86 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi6g00023 Sebi-Chr6 1679163 1681327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi6g00023 15 85 C3H Transcription Factor Family AT5G05830 66.197 1.71e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi6g00023 - - gmx:100816407 130.568