Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi6g00022 ATGGGGAATTCGTCCTCAGCTTATGGCGAGATCCAGTACCGTGGGCAGGATTGCATCATCCAGCCACAAGTGAGTCCTGTGATTATATATTTCTTGATTAATGTTGGTGGTGCACTTGCTTGTGATGCGTTACCTTCCCTCTACAATGAATTACTCAGTTTGGAGAAGCCAAATCCTGAAATATTAATCTTCAGCAAAGACTTACTCAATAGTGTCACAAGCAGGATAAGCTTTATGGCTGCCCCAAGTTCAAGCTTCTTTTCCCGGGATTCCTTGCATGCACTATATAACATAGGTTCATCTCAAACTTTGCATCGTCGCAGGGGATCAAGGATTACTATTCCGTCCTTGGGGGTGTCAAAAAGTGCTAGTAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCTCGGAATTATCATCCAGATGTGAACAAAGAACCTGGTGCAGAAGAGAAGTTTAAGGAAATAAGTAATGCATATGAGGTCTTATCAGATGATGAGAAACGATCCATATATGACAGATATGGAGAGGCCGGGCTTAAAGGTTCAGGAATGGGCATGGGGGATTTCTCCAATCCTTTTGACCTGTTTGAGACACTGTTTGAGGGCATGGGTGGTATGGGCGGCATGAGCGGCAGAGGTTCTTGGAATGGAGCAGTTGATGGCGAGGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCTGTTTTTGGAGTGGAAAAGGAGATAGAGGTTAGGCGATTAGAGACCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTAAATCATCCAGATGTAGCACTTGTGGTGGTCAGGGTCGGGTTGTCACATCAACAAGGACCCCATTAGGTATCTTTCAGCAGTCTATGACATGCTCTTCTTGCAATGGGACTGGAGAAACTTCAACACCTTGCAATACATGTTCTGGGGATGGTCGAGTGAGGAAAACAAAGCGGATAAGTCTCAAGGTTCCAGCTGGTGTGGATTCTGGTAGCCGTTTAAGGGTACGAAATGAAGGTAATGCTGGAAGGCGCGGGGGTGCTCCTGGTGACCTCTTTGTTGTTCTTGAAGTTATCCCAGATCCTGTGCTTAAACGAGAAGACAATAACATTTTATACACTTGTAAGGTGTCTTATATTGATGCAATCTTGGGGACTACAGTTAAGGTTCCTACTGTGGATGGCATGGTGGATTTGAAAATCCCAGCTGGTACCCAACCAGGCTCAACACTTGTTATGGCTAGGAAAGGTGTTCCCCTTCTTAACAAAAAGAATATGAGGGGTGATCAATTGGTTCGAGTGCAAGTTGAAATCCCTAAAAGACTGAGCAGTGATGAGAGAAAACTTATTGAGGAACTTGCTGATTTAAGCAAAGGAAAGACTGCCGCCAGTAGGAGATAA 1410 0.4433 MGNSSSAYGEIQYRGQDCIIQPQVSPVIIYFLINVGGALACDALPSLYNELLSLEKPNPEILIFSKDLLNSVTSRISFMAAPSSSFFSRDSLHALYNIGSSQTLHRRRGSRITIPSLGVSKSASKSEIKSAYRKLARNYHPDVNKEPGAEEKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGSGMGMGDFSNPFDLFETLFEGMGGMGGMSGRGSWNGAVDGEDEYYSLVLNFKEAVFGVEKEIEVRRLETCGTCNGSGAKPGTKSSRCSTCGGQGRVVTSTRTPLGIFQQSMTCSSCNGTGETSTPCNTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGAPGDLFVVLEVIPDPVLKREDNNILYTCKVSYIDAILGTTVKVPTVDGMVDLKIPAGTQPGSTLVMARKGVPLLNKKNMRGDQLVRVQVEIPKRLSSDERKLIEELADLSKGKTAASRR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi6g00022 469 PRINTS DnaJ domain signature 168 187 IPR001623 -
Sebi6g00022 469 PRINTS DnaJ domain signature 132 147 IPR001623 -
Sebi6g00022 469 PRINTS DnaJ domain signature 148 168 IPR001623 -
Sebi6g00022 469 PRINTS DnaJ domain signature 114 132 IPR001623 -
Sebi6g00022 469 ProSiteProfiles Zinc finger CR-type profile. 239 320 IPR001305 GO:0031072|GO:0051082
Sebi6g00022 469 FunFam Chaperone protein dnaJ A6 chloroplastic 113 212 - -
Sebi6g00022 469 Pfam DnaJ central domain 252 315 IPR001305 GO:0031072|GO:0051082
Sebi6g00022 469 Pfam DnaJ domain 117 173 IPR001623 -
Sebi6g00022 469 SUPERFAMILY HSP40/DnaJ peptide-binding domain 367 453 IPR008971 GO:0006457|GO:0051082
Sebi6g00022 469 SUPERFAMILY Chaperone J-domain 117 211 IPR036869 -
Sebi6g00022 469 Gene3D - 362 469 - -
Sebi6g00022 469 ProSiteProfiles dnaJ domain profile. 112 176 IPR001623 -
Sebi6g00022 469 Pfam DnaJ C terminal domain 227 442 IPR002939 -
Sebi6g00022 469 CDD DnaJ 117 165 IPR001623 -
Sebi6g00022 469 FunFam Putative Mitochondrial DnaJ chaperone 304 357 - -
Sebi6g00022 469 SUPERFAMILY HSP40/DnaJ peptide-binding domain 220 374 IPR008971 GO:0006457|GO:0051082
Sebi6g00022 469 FunFam Molecular chaperone DnaJ 244 320 - -
Sebi6g00022 469 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 239 319 IPR036410 -
Sebi6g00022 469 CDD DnaJ_C 223 445 - -
Sebi6g00022 469 Gene3D DnaJ domain 116 212 IPR036869 -
Sebi6g00022 469 Hamap Chaperone protein DnaJ [dnaJ]. 109 465 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Sebi6g00022 469 NCBIfam molecular chaperone DnaJ 117 458 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Sebi6g00022 469 Gene3D - 222 357 - -
Sebi6g00022 469 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 116 465 - -
Sebi6g00022 469 Gene3D - 252 315 - -
Sebi6g00022 469 FunFam Chaperone protein dnaJ 1, mitochondrial 362 469 - -
Sebi6g00022 469 CDD DnaJ_zf 252 315 IPR001305 GO:0031072|GO:0051082
Sebi6g00022 469 ProSitePatterns Nt-dnaJ domain signature. 153 172 IPR018253 -
Sebi6g00022 469 SMART dnaj_3 117 168 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi6g00022 Sebi-Chr6 1620129 1623501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi6g00022 107 175 C2H2 Transcription Factor Family AT1G74250 42.667 4.56e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi6g00022 K03686 - gmx:100786143 690.649