Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi6g00015 ATGGATTTCGAGGAGCATGAGGAAGAGATGATGGGAATGGGTGAGGCGAGTTACGACGACTCGCTCGTTAACCCACCCCGAGTCAGAATGCCGAGTCCTGTCCAAGACCCCACCCCAGCGGTGGTGATGGTCAGGAACAGCGGCAAAGGGAGGTACAAAGAGTGCCTCAAGAACCACGCCGTCGGCATTGGAGGCCACGCCGTCGACGGTTGCCGTGAGTTCATTGCTGCCGGTGAGGAAGGCACCCTCGACGCTCTGAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGATAGCCCCATAACCGTTGCCGGAGGCCAGTACCATTCCTTCCACCGCCACCAGGCGCCGCAGTTCGCTGCGTGTTATCGTACCCCTTCGGGGTACCTCCATGTGGCGCCGCCGAGAGCGGCGGTGGCTGTGCCGCTGGCTCTGCCAGCGAACTCAGGGGGTGGTGGTGGGGCCCAGAGCGGTGGGGAGGATCATGAAGAGGTTTCGGACCCGAATGGTGGTGGTGGAGGGTCGAACTCGAAGAAGAGGTTCAGGACCAAGTTCAGTCCGGAGCAGAAGGAGAAGATGCTGGCTTTTGCTGAGAAAGTGGGTTGGAGACTTCAGAAGCATGATGATGGTTCTGTGCAGGAGTTCTGTGACCAGACTGGTGTCAAGCGTCAGGTTCTGAAGGTTTGGATGCATAACAACAAGCACACACTTGGAATGAAGCCCTAG 735 0.5891 MDFEEHEEEMMGMGEASYDDSLVNPPRVRMPSPVQDPTPAVVMVRNSGKGRYKECLKNHAVGIGGHAVDGCREFIAAGEEGTLDALKCAACNCHRNFHRKDSPITVAGGQYHSFHRHQAPQFAACYRTPSGYLHVAPPRAAVAVPLALPANSGGGGGAQSGGEDHEEVSDPNGGGGGSNSKKRFRTKFSPEQKEKMLAFAEKVGWRLQKHDDGSVQEFCDQTGVKRQVLKVWMHNNKHTLGMKP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi6g00015 244 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 51 101 IPR006456 -
Sebi6g00015 244 Gene3D - 167 241 - -
Sebi6g00015 244 NCBIfam homeobox domain, ZF-HD class 181 237 IPR006455 -
Sebi6g00015 244 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 52 101 IPR006456 -
Sebi6g00015 244 FunFam Zinc-finger homeodomain protein 2 172 242 - -
Sebi6g00015 244 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 240 - -
Sebi6g00015 244 MobiDBLite consensus disorder prediction 152 185 - -
Sebi6g00015 244 Pfam ZF-HD protein dimerisation region 51 101 IPR006456 -
Sebi6g00015 244 SUPERFAMILY Homeodomain-like 171 240 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi6g00015 Sebi-Chr6 1229841 1230575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi6g00015 1 240 ZF-HD Transcription Factor Family AT4G24660 48.583 1.24e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sebi6g00015 ZF-HD_dimer 6.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi6g00015 - - lja:Lj0g3v0229739.1 294.278