Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi697g00009 ATGATTTTGGATGCTGAATTTGATTATTCAAAGGCAGTAGACTTGGGATACATATCTCCAAAATTACATGAACTTATTAAACTCTTCCAGACTTTTGGAGAATCTAGTCAGGTGTTGTGCCTTATTTTTGTTGAAAGAATCATTACAGCTAAGGTGATTGAAAGATTTGTAAAGAAAGTTTCCCAAATATCTCATTTCACAGTTTCCTATTTAACTGGAAACAATACATCGGTTGATGCACTGGCTCCTAAGAGGCAGAAGGAGATATTGGATTCTTTTCGATCTGGAAAGGTCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTTCCAAACTGCTCTTGTGTGATACGTTTTGACCTCCCCAAGACAGTTTGTAGTTATGTCCAATCTCGGGGAAGATCTAGGCAGGCTAACTCCCAATTTATTTTGATGTTGGAGAGGGGAAACTTGAAACAAAGAAATCAACTCTTCGACATAATCAGGAGTGAGCGCTCCATGACTGATGCAGCTATTAATAAAGACCATGAATCTAATTTAAGGGCGTTTACAGTAGAGAAAACAAATGCATACCATGTGGACTCTACTGGAGCATCAGTCACTTTAGATTCTAGTGTTACACTTATAAATAAATATTGTGAAAAGCTCCCACGAGATAAGTACTCATGTACAAAGCCCACTTTCGAGTTTCTGCCTATGGAGGGGTGTTACCAATGCAAATTAATTTTACCACCTAATGCAGCTTTCCAAACAATAATTGGTCCTTCAGGAAAAGATGTTCGTTTGGCAAGGAATCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGTGCCTTAAATGAACATCTTGTCCCATCCATTGAAGATCCTTCGGAAGCTGACCATATTGTGAAAAACAAAGATTCAAGTTCAGGTGCAGGAACCACAAAAAGAAAGGAGTTACATGGCACAACCAGCATTCGTTCATTATGCGGTACATGGGATGACAAACTCGATGGAGCCAAATTTCATGCTTATAAATTCGAATTCACTTGTAATATTGTTAGTGAAATTTATTCTGGATTTGTTCTTCTGATGGAGTCAAAGCTTGATGATGATGTGGGAAATATTGAATTGGATCTTTATTTGGTCTCTAAGACTGTGAAGGCTTCAGTCTCTTCCTGTGGGCAAGTTGATCTGGATGCTGAACAGATGATGAAAGCTAAATGTTTCCATGAGCTTTTCTTCAATGGTTTGTTTGGGAAATTGGTTCTTAGGTCCAAATCAGCCAAAGGGGAATGGGAATTTTTACTTCAAAAGGACACAAAATTATTGTGGAGCCCAAAAAACTTATATTTGCTTCTACCACTTGAGAAATTCCGTGATATATCTAAGGGTTCTTTGCAAATACATTGGTCTGGAATCAATTCTTGTGCATCTGCAATTGAATTTTTAAGGCGGAAATTTTCATTGGTTGCTGGAGATGGTGCTGATAAGGGCAAAATCACATCACCATGTGATACCAGTTCATCACATATGGAATACGAAAGTGCACACGAGATTCACTTTGCTAATTGTGTGGTCAACATTAATAATCTGAAAAATATGGTGGTTTTGGCCATTCACACTGGGAAAATATATTGTATCATTGAAGTAGTCACTAGCCTATCTGCTGAAAGTCCTTTTGATGGAAACAATGAAAAGTCTGGGGCAGAATGCATAACTTTCTCGAATTATTTCAACAAAAGGTATGGGATTACGCTGAGACATCCAGGACAGCCTTTGTTACGGTTGAAGCAAAGTCATAATCCGCACAATCTTTTTTTGAACTTCCATGAGGAAGATGCCGGGGACAAGTCATCACAAATCGGCCCGGTAAATCCAAAAATGCCAGCACATGTTCACATGCCACCTGAGCTTCTATGCCTTCTTAATGTTAAAAGAGATGTTTTGAAGTCAATGTACTTGCTACCATCAATGATGTACCGTATTGAATCTTTCATGTTGTCCAGTCAGCTTAGAGAAGAGATAAATGGAGAAACTAGCAGTTTCAACATATCTAGCTCTCTGCGTCTTGAGTTGCTAGGAGATTCTATTTTGAAATATGCGGTGAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACATGAAGGACAATTATCTGCCAGACGACAATCGGCTGTTCGTAATTCAACCCTACATAAACTGGGAACAGATCGCAAATTACAGGGATATATCCGAGACTCTGCGTTTGAACCGCGTCGTTGGGTTGCTCCTGGACAGCGCTCTATACACCCTGTTTCTTGTGATTGTGGGTTGGAAACCCTAGAAGTTCCTTTAGATGTGAAATTCCATACTGAAGATCCAAAAGTTGTGGTTGGGAAGTTATGTGACAGGGGTCACCGCTGGATGTGCTCAAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCGTACTATGTGGGCGGTGGATTGGTTGCTTCACTTCATGTGATGAAATGGCTTGGGATTGATTCAGAACTTGAACCATCCATGGTTGATGAAGCCATCACTGCTGCATCTCTGCACACATATATGCCAAAAGTAAATGAGATTGCAAGCCTTGAAAGAAAATTGGATATGAATTTTCTGTCAAGGGACTCTTATTGGAGGCAATCACACATTTGTCTGGGGCAGAACTTGGGATTGGCTTCTGTTATGAGGGTCATTTCTGAATCAGAGAATAACACCATATCACTCCCAAGCATTAGAGCTCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAATTGATACCAAGCTCAATCTTGATGAAGTGTGGAAGGTTTTCAATCCTCTGTTATCCCCCATTGTTACTCCTGATAAACTTGAACTGCCTCCATTGCGTGAACTAAATCAATTATGTGACTCGCTCGGAAACGGGGGATTTCATATGGTAGTAGCATGTCCAAGGGAAAAAAGAGATAATCCTGACCATATCAGTGATTCATCTCATCTCAAAAGGGATTTTAGTCTTCTCCCCTGTCAAACTGAAGAACATTCCTCAGAGCCAGTAGCGCGTAAAAGACCCAAACTGGATGAAGCTAACTTAACTGCAAATACTTCTACTGGTTTTTTGCCTCCCAAAGACTGTTCCAGTGAAGCCACTGATTGTAGTCCTTCCATTCCAGTTATTACATCAATTAATATGAAGAAGGGAGGACCCCGGACCACACTTTATGAACTGTGCAAGAGGCTGCAGTGGCCATTGCCGGCATTTGATTCAACAGAATATAAAGATAGAACTCTATTTGAATCCTGTGAAGGCCTGGAAGGAAGCAAGGGACAAAACTGTTTTGTAGCAAAAATTACCTTGTGCATACCTAATGATGGTGATATAAAATGCCAAGGAGATGCTAGAAGTGACAAGAAGAGCTCATATGACTCTGCTGCAGTTGAAATGCTTTATGAGCTACAAAGACTGGGGAAACTTGAGATTAATGTTCCCCAATAA 3504 0.4001 MILDAEFDYSKAVDLGYISPKLHELIKLFQTFGESSQVLCLIFVERIITAKVIERFVKKVSQISHFTVSYLTGNNTSVDALAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVCSYVQSRGRSRQANSQFILMLERGNLKQRNQLFDIIRSERSMTDAAINKDHESNLRAFTVEKTNAYHVDSTGASVTLDSSVTLINKYCEKLPRDKYSCTKPTFEFLPMEGCYQCKLILPPNAAFQTIIGPSGKDVRLARNLVCLEACKKLHQMGALNEHLVPSIEDPSEADHIVKNKDSSSGAGTTKRKELHGTTSIRSLCGTWDDKLDGAKFHAYKFEFTCNIVSEIYSGFVLLMESKLDDDVGNIELDLYLVSKTVKASVSSCGQVDLDAEQMMKAKCFHELFFNGLFGKLVLRSKSAKGEWEFLLQKDTKLLWSPKNLYLLLPLEKFRDISKGSLQIHWSGINSCASAIEFLRRKFSLVAGDGADKGKITSPCDTSSSHMEYESAHEIHFANCVVNINNLKNMVVLAIHTGKIYCIIEVVTSLSAESPFDGNNEKSGAECITFSNYFNKRYGITLRHPGQPLLRLKQSHNPHNLFLNFHEEDAGDKSSQIGPVNPKMPAHVHMPPELLCLLNVKRDVLKSMYLLPSMMYRIESFMLSSQLREEINGETSSFNISSSLRLELLGDSILKYAVSCHLFLKYPKKHEGQLSARRQSAVRNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQRSIHPVSCDCGLETLEVPLDVKFHTEDPKVVVGKLCDRGHRWMCSKTIADCVEALIGAYYVGGGLVASLHVMKWLGIDSELEPSMVDEAITAASLHTYMPKVNEIASLERKLDMNFLSRDSYWRQSHICLGQNLGLASVMRVISESENNTISLPSIRAPKALGDLVESIAGAILIDTKLNLDEVWKVFNPLLSPIVTPDKLELPPLRELNQLCDSLGNGGFHMVVACPREKRDNPDHISDSSHLKRDFSLLPCQTEEHSSEPVARKRPKLDEANLTANTSTGFLPPKDCSSEATDCSPSIPVITSINMKKGGPRTTLYELCKRLQWPLPAFDSTEYKDRTLFESCEGLEGSKGQNCFVAKITLCIPNDGDIKCQGDARSDKKSSYDSAAVEMLYELQRLGKLEINVPQ 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi697g00009 1167 Pfam PAZ domain 529 663 IPR003100 GO:0005515
Sebi697g00009 1167 SMART helicmild6 54 141 IPR001650 -
Sebi697g00009 1167 ProSiteProfiles PAZ domain profile. 530 643 IPR003100 GO:0005515
Sebi697g00009 1167 Gene3D Ribonuclease III domain 841 959 IPR036389 GO:0004525|GO:0006396
Sebi697g00009 1167 Pfam Ribonuclease III domain 689 822 IPR000999 GO:0004525|GO:0006396
Sebi697g00009 1167 FunFam Dicer-like 104 519 640 - -
Sebi697g00009 1167 SMART PAZ_2_a_3 505 667 IPR003100 GO:0005515
Sebi697g00009 1167 FunFam Endoribonuclease dicer-like 1 203 299 - -
Sebi697g00009 1167 PANTHER DICER-RELATED 914 977 - -
Sebi697g00009 1167 SMART riboneu5 672 843 IPR000999 GO:0004525|GO:0006396
Sebi697g00009 1167 Gene3D paz domain 515 641 - -
Sebi697g00009 1167 SUPERFAMILY RNase III domain-like 683 840 IPR036389 GO:0004525|GO:0006396
Sebi697g00009 1167 CDD RIBOc 689 834 IPR000999 GO:0004525|GO:0006396
Sebi697g00009 1167 Gene3D - 14 177 IPR027417 -
Sebi697g00009 1167 Pfam Helicase conserved C-terminal domain 25 138 IPR001650 -
Sebi697g00009 1167 SUPERFAMILY RNase III domain-like 887 957 IPR036389 GO:0004525|GO:0006396
Sebi697g00009 1167 CDD SF2_C_dicer 17 149 - -
Sebi697g00009 1167 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 208 298 IPR005034 GO:0016891
Sebi697g00009 1167 Pfam Dicer dimerisation domain 208 292 - -
Sebi697g00009 1167 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 24 179 IPR001650 -
Sebi697g00009 1167 ProSiteProfiles Ribonuclease III family domain profile. 651 823 IPR000999 GO:0004525|GO:0006396
Sebi697g00009 1167 SUPERFAMILY PAZ domain 527 642 IPR036085 GO:0005515
Sebi697g00009 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 156 IPR027417 -
Sebi697g00009 1167 Gene3D Dicer dimerisation domain 203 300 IPR038248 -
Sebi697g00009 1167 FunFam Endoribonuclease dicer-like 1 12 175 - -
Sebi697g00009 1167 Gene3D - 1078 1157 - -
Sebi697g00009 1167 Gene3D Ribonuclease III domain 663 834 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi697g00009 Sebi-Chr697 108550 118999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi697g00009 39 138 Eukaryotic Initiation Factors Gene Family AT3G19760 37.383 5.15e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi697g00009 K11592 - gmx:100806831 1407.51