Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi697g00007 ATGGATTTTTCAACGGGAGATGTTGGTGGGTCTGGTGATGAAGACACTCAGAACTCAATGGAAAAAAAATCCCCTTACAGTCGTCTCAATGTCGCACAAACAACTATACTTGAAAATTTCTTCAAGGAATGCCCAATTCCAGATAAAGATCGACAACGTCAATTGGCTGATAAGGTTGGACTTGAACCCAAACAAATTAAGTTTTGGTTTCAGAACAAGAGGACTCAAACAAAGGTTCAACGCAAGCGAGAAAATAATACTACTCTTCGAGTTGAGAAGGATAGGATGCTTAACGAAAACCTCCAAATGAAAGAGGCAATAGAGAATATAATTTGCCAAGATTGTGGGGGTCCACCGTTACTTGAAGAAGAGCATGAAAGTTTCATGCGACAAATGCAACTTCAAAATACAATGATAAAAGAAAAGCATGGGAAAGTGTGTAACCTTCTTGCAAGGTACTTAGAGAAATATATGTCAACACCTAGGTTGCAGCAAGTTCCTATTCCTATAACTGAATCTTCTTCACATGAGCCAGCACTCAATGGAAGTTCAAGTACATCTCTTGATCAAAGTCTTGGTTTTCACAACCCAATGGAAATTTTTATTATGGAAAAAGCATTGATGTCTGAGATCGCAACTTCTGCAAAGGAAGAACTAGTTAAACTTTTGCGCATTAATGAGCCTTTCTGGGTCAACTCATCAGCTCCAGATGGAAAACTCACCCTTCATCGTGAAACTTATGAAAAAATTTTCCCTCAGACTAATCACATGAAAGGTGAAAATGTGCATCTAGAATCATCAAAAGATTCAGGAGTAATGAACATTAGGAGCAAGGAATTGGTTGATATATTTCTAGATGCGCTCACATGGGTTGAGCATGTGGAAGTGGATGATGAGATTCATACCCACCAACTATATAGAGATCTTGTTGGCGTCAATATTGATTATGGAGCAAGAAGATGGATATTGGAACTTCAAAGAATGTGTGGGAGATTTGCTTCCTTTCATGTTAAAAAGATACCTTATCAAGACTTTGGAGGAGTGATTGATTCACTTGAAGGGAGGAAGGGTGTAATGAAGTTTTCTCATCAAATGGTTAAGACATTCTGTGAAAGTTTAACCATGTCAAGTCATGAGCCAGACTTCCCACATTTAACTGTGGGAAATAATAATGGGGTTAGGGTCAATGTTCGCAAAAGCATGGGCATAGGCCAACCAAATGGAACAGTTGTTATGGCTGCTACCTCCTTTTGGCTTCCTCTCCATTATGAGAAAGTTTTTGAGTTTCTCATAGATCACAAAAGACGAGCTCAGGTTTTCACAAGCTAA 1329 0.3875 MDFSTGDVGGSGDEDTQNSMEKKSPYSRLNVAQTTILENFFKECPIPDKDRQRQLADKVGLEPKQIKFWFQNKRTQTKVQRKRENNTTLRVEKDRMLNENLQMKEAIENIICQDCGGPPLLEEEHESFMRQMQLQNTMIKEKHGKVCNLLARYLEKYMSTPRLQQVPIPITESSSHEPALNGSSSTSLDQSLGFHNPMEIFIMEKALMSEIATSAKEELVKLLRINEPFWVNSSAPDGKLTLHRETYEKIFPQTNHMKGENVHLESSKDSGVMNIRSKELVDIFLDALTWVEHVEVDDEIHTHQLYRDLVGVNIDYGARRWILELQRMCGRFASFHVKKIPYQDFGGVIDSLEGRKGVMKFSHQMVKTFCESLTMSSHEPDFPHLTVGNNNGVRVNVRKSMGIGQPNGTVVMAATSFWLPLHYEKVFEFLIDHKRRAQVFTS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi697g00007 442 Coils Coil 79 99 - -
Sebi697g00007 442 SUPERFAMILY Homeodomain-like 11 80 IPR009057 -
Sebi697g00007 442 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Sebi697g00007 442 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 287 IPR042160 -
Sebi697g00007 442 MobiDBLite consensus disorder prediction 1 27 - -
Sebi697g00007 442 ProSiteProfiles START domain profile. 201 294 IPR002913 GO:0008289
Sebi697g00007 442 ProSitePatterns 'Homeobox' domain signature. 55 78 IPR017970 GO:0000981|GO:0006355
Sebi697g00007 442 Gene3D - 11 98 - -
Sebi697g00007 442 Pfam Homeodomain 26 78 IPR001356 GO:0003677
Sebi697g00007 442 CDD homeodomain 23 81 IPR001356 GO:0003677
Sebi697g00007 442 SMART HOX_1 22 84 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi697g00007 Sebi-Chr697 84703 88158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi697g00007 288 438 Homeobox Transcription Factor Family AT1G73360 41.722 1.19e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi697g00007 Homeodomain 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi697g00007 K09338 - gmx:100795075 295.049