Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi697g00001 ATGGCGGATGTGATGGTGATGAGAGAGATTGAGGACAAAGCCTCGCTTCTTGGAATCGATCTTTCTACTCTTGATCTCGACGCCATTCGCCTTCCTCCAGGCGATGATTGTGGCATCGCCAGTGATGATGAGGATATTTATCAAGAGGATAATCTTGAGTTCGACTCTGGATTCGCCAACATTATAGTGGTGGATAACCTCCCCGTTGTTCCACGAGAGAAGTTCGAGAAGCTCGAAGGAGTTGTTCGTAAAATTTATAGTCAGATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCCATTGATCCTGAAACCGAAAAGACGTTAGGTTATTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGCTAAAGAGAAGACTCATGGATACAAATTGGACAGGGCACACATTTTTTCTGTTAGCATGTTCGATGACTTTGACAGGTTTATGAAAGTTCCAGACGAGTGGGCTCCTCCTGAAACTAAGCCATATGCAGCAGGGGAAAATCTTCAGCATTGGCTCACTGATGCGAAGGCCCGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGACGCAAGGCATTTAAAGCCTGACCCTGTTTATAAGCGTACATTTTGGACTGAGAGTTTTGTGCAATGGTCCCCTCTTGGCACATACTTGGCAACTGTTCACAGGCAGGGGGCAGCAGTCTGGGGAGGTGCTAAACCTTTAATCGTCTCATGCGATATGCTCATCCTCAGCCATGAACCAAGCAATCCTCGAGATGCTAATGGTTGTGATAAATATATTGATGTGAGGACTGGTAAAGTGATGAGGGACTTTAAAGGAAGTGCTGATGATTTTGCAATTGGAGGTGCTGGGGGTGTTTCCGGAGCATCATGGCCTGTTTTCAAATGGAGTGGTGGAAGGAGAGATAAGTACTTTGCAAGGATGGGAAAAAATATACTCTCTGTATATGAGACAGAGACTTTTTCTCTCGTTGACAAAAAGTCCTTAAAGGTTGAAAATATAATGGATTTCAGCTGGTCTCCAACTGATCCAATCATTGCACTCTTTGTTCCTGAGATGGGAGGTGGTAAGTCTGATTCAAATCCCCAGCAAAGAGGAACTCAGACAGAAGAACCTTTTAGTGTTAGTGACTGCAAGATGTACTGGCAAAGCAATGGGGATTACCTTGCTGTTAATGTAGACCGATATACCAAAACTAAAAAAAGCACATACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGTGACATACCAATTGAAGTTCTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCAAAAGGCCATAGGTTTGCTGTTATTCATGGTGATAACCCGAAGCCTGATGTTAGCATTTACTCTATGCGGACTGCTCAGAACACTGGTCGCTTTATTGTACTAGCAGGGTTGAAAGGCTTCAATGGACAGTTGGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGACCCAACTGGAAGGTATGTTGCCACTGCTGTGACTTCAGTTCATGAGATGGAAAATGGTTTCAACATTTGGTCGTTTAATGGCAAGCATCTGTATCGGATATTGAAGGATCACTTCTTTCAGTTCTTATGGAGACCAAGGCCACCATCTTTCTTGACTCCCGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATACGAGGCAGAGGATCAAGATGCAAAGCTTCGGGATGGAGAGGCCAGTGACGAAGAAGAGGAATACGAGGCAAAGGACATTGAGGTGGAGGAGGTCATTGATGTAACTGAAGAGGTCCTTCACTTTGAGTATGGTCAAGAGTGA 1905 0.4373 MADVMVMREIEDKASLLGIDLSTLDLDAIRLPPGDDCGIASDDEDIYQEDNLEFDSGFANIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPIDPETEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFSVSMFDDFDRFMKVPDEWAPPETKPYAAGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGAKPLIVSCDMLILSHEPSNPRDANGCDKYIDVRTGKVMRDFKGSADDFAIGGAGGVSGASWPVFKWSGGRRDKYFARMGKNILSVYETETFSLVDKKSLKVENIMDFSWSPTDPIIALFVPEMGGGKSDSNPQQRGTQTEEPFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSIYSMRTAQNTGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDAKLRDGEASDEEEEYEAKDIEVEEVIDVTEEVLHFEYGQE 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi697g00001 634 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Sebi697g00001 634 Pfam Eukaryotic translation initiation factor eIF2A 384 559 IPR013979 -
Sebi697g00001 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Sebi697g00001 634 SUPERFAMILY RNA-binding domain, RBD 60 140 IPR035979 GO:0003676
Sebi697g00001 634 SUPERFAMILY DPP6 N-terminal domain-like 190 557 - -
Sebi697g00001 634 MobiDBLite consensus disorder prediction 588 602 - -
Sebi697g00001 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Sebi697g00001 634 CDD RRM_eIF3B 60 143 IPR034363 -
Sebi697g00001 634 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 628 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sebi697g00001 634 Gene3D - 55 154 IPR012677 -
Sebi697g00001 634 SMART rrm1_1 61 143 IPR000504 GO:0003723
Sebi697g00001 634 PIRSF Transl_init_eIF3b 7 271 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sebi697g00001 634 PIRSF Transl_init_eIF3b 252 613 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sebi697g00001 634 PIRSF Transl_init_eIF3b 594 628 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sebi697g00001 634 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 256 605 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sebi697g00001 634 MobiDBLite consensus disorder prediction 588 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi697g00001 Sebi-Chr697 3898 8151 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi697g00001 5 628 Eukaryotic Initiation Factors Gene Family AT5G27640 65.211 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi697g00001 K03253 - gmx:100779711 1104.74