Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi695g00022 ATGATTGTGTGTATTTTGATGCTTTACTTCCTTTGGATTAAGGGCGGTCAGATTGAAGCAACTGTTGGGAAGCAGTTCATAAGGAAATTTGATAGCTGTGTGGTTGAGGGAGAGGTCTATAAGGTGACTGATTTTGCAATCATCAAGAACCTTGGAAAGTTTAGAGCAACGAGCCATGGTTTCAAGCTGGTTTTCAATGCCACCACCAAATTGTTACCCACACTGGTAGGAAGTATCCCATTTCATGGGCTCTCATTCCTCAAGACCTCCGATATCATGAAAACAAAGGGCCATTCAGACTACCTATTGGATTATATGGGGATCTTGACAGCAGTATCTGATGAGATGACAATGACCTCAAGAGATGGACGAGAGACTAGGTTGATGCAGTTGGAACTGGGTGATGAAACGGGGGAGATAAGGTGTGCAATCTTTGGAGATTTGATTGATGTTGTTGCTGGCTTACTTGCTCTGCCTCGGGTAGGTCTACCTGTGGTTATCCTTCAGGTTGTGAGGGTAAACAAGTATAAAGGAGAGGTAGGGATACAAAATGTGATGAATGCTACGAAGATACTGTGGGAGCCTGACATCCCAGAAGCAATTCAGTTTAAACAAGAGCTGGCTGTGCATGAGGTGGAGTCTGATCTGAAGGTTGGAATGCTGCCCAAGAGTAAAACAATTGTCCCTTTGCGGGATGATTTTTTCAAGCTTTACCCAAGGAAGACCTTGTGCCAATTAGTTGAAACTGAGGAGGAGGGTTATTTCACAACCATGGCAACTATTTCTAAGATTTGTGATGATTATCCTTGGTGGTACATGGCCTGCAGTTGTATGAGAGCTGTGACACAAATTGGAGTAGCATATTTCTGCAAAGATTGTAACTTGCATATGTTTAATGCTATGCCCAGGTATAAGCTGAAGTTGGATGTCAGCGATGGAGATGACTTAGTGAGGCTGGTGCTTTTTTATGGTGAAGCAGTTGATCTTCTGAATAGGTCTTGCGAGGAGCTGGTGATACAGTCAAAGGTTGAGTCGGACTGTGACTTTCCTGAAGAAATCTCCATGTTGGTTGGGAAGGAGGTTTTATTCAAGGTGGAGAAGACAGCTGAAGCTTCTTCCAACTTTGATGGCTCTCTAAAAGTTAAGAGGGTTTGCTCAGACCCTCTATTGATTGATGAGTACAAGCAAAGGCTATGTGAGGATACACCATTAAAGCAAAAGTTTGCACCATTTTTCCCAAAACTTGGCAATGGTGAGGAGAGTAGTGGCACGAAGGAGATCAAAGTTGAGAGTTGTTCAGTCATTACAGAGATTGATGTGACCCCTTTGTCTTATGGTCAACCCTTCAACACACCTGATGCAGAATCTATTATCTCAAAGAGGGAAGCCACTCAATCTCTTGAACCTGCACCCGAACGCAAAAGGAGGGCCAAGGTGAAGCCTGTAAAGTTTGAGTAA 1458 0.4348 MIVCILMLYFLWIKGGQIEATVGKQFIRKFDSCVVEGEVYKVTDFAIIKNLGKFRATSHGFKLVFNATTKLLPTLVGSIPFHGLSFLKTSDIMKTKGHSDYLLDYMGILTAVSDEMTMTSRDGRETRLMQLELGDETGEIRCAIFGDLIDVVAGLLALPRVGLPVVILQVVRVNKYKGEVGIQNVMNATKILWEPDIPEAIQFKQELAVHEVESDLKVGMLPKSKTIVPLRDDFFKLYPRKTLCQLVETEEEGYFTTMATISKICDDYPWWYMACSCMRAVTQIGVAYFCKDCNLHMFNAMPRYKLKLDVSDGDDLVRLVLFYGEAVDLLNRSCEELVIQSKVESDCDFPEEISMLVGKEVLFKVEKTAEASSNFDGSLKVKRVCSDPLLIDEYKQRLCEDTPLKQKFAPFFPKLGNGEESSGTKEIKVESCSVITEIDVTPLSYGQPFNTPDAESIISKREATQSLEPAPERKRRAKVKPVKFE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi695g00022 485 Gene3D - 235 402 IPR012340 -
Sebi695g00022 485 Pfam Domain of unknown function DUF223 14 73 IPR003871 -
Sebi695g00022 485 CDD RPA1_DBD_C 245 401 IPR047192 -
Sebi695g00022 485 Gene3D - 14 73 IPR012340 -
Sebi695g00022 485 Gene3D - 78 215 IPR012340 -
Sebi695g00022 485 Pfam Replication factor-A C terminal domain 254 373 IPR013955 -
Sebi695g00022 485 CDD RPA1_DBD_B_like 104 205 - -
Sebi695g00022 485 SUPERFAMILY Nucleic acid-binding proteins 84 208 IPR012340 -
Sebi695g00022 485 SUPERFAMILY Nucleic acid-binding proteins 15 72 IPR012340 -
Sebi695g00022 485 SUPERFAMILY Nucleic acid-binding proteins 238 370 IPR012340 -
Sebi695g00022 485 MobiDBLite consensus disorder prediction 451 485 - -
Sebi695g00022 485 CDD RPA1_DBD_A_like 14 70 - -
Sebi695g00022 485 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi695g00022 Sebi-Chr695 312018 314308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi695g00022 15 322 Core DNA Replication Machinery Family AT2G06510 23.353 8.16e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi695g00022 - - lja:Lj6g3v0884310.1 308.145