Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi694g00025 ATGCCGGACGGAGAATCCTCCACCGCCGGTGCCGGCCAACCGCCCATGCAGTCCTCTTCAAGCGTCTCCGATGATGGACAGTCCCTTAGTCTATCCCAAGTAAAAATTCATGAGGACCCCATCATGAAAGATCCCAAGAAAATTGCAAGAAAGTATCAGTTGGAGCTGTGCAAAAAAGCAATGGAGGAAAATATAATTGTTTATTTGGGGACAGGATGTGGGAAGACCCACATTGCTGTTCTGCTTATGCATGAGATGGGTCATTTGATACGGAAGCCCAAGAAGGATGTATGTGTCTTTCTTGCCCCTACAGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGAAGACTCTACTGATTTTAAGGTTGGGACTTACTGTGGGAGTTCTAAGCGCTTGAGGCGTCACCAAGATTGGGAGCAGGAGATTGGACAGTATGAGGTTCTTGTCATGACCCCGCAAATATTACTTCACAACTTATCTCATTGTTTTATCAAGATGGAGATGATTGCACTTCTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATCCTTATGCAGAAATCATGAAAGTTTTCTACAAAAATAACTCCACAAAGGTTCCCCGTATATTTGGCATGACCGCTTCTCCTGTTGTAGGAAAAGGTTCTTCTAGTGAAGCAAATCTACCAAAAAGCATCAATAGTCTTGAACATATGCTTGATGCTAAGGTATACTCTGTTGAAGACAAGGAACTGCAATCTTTTGTGACCACTCCCGTGATTAATATATATCCTTATGCCTCAACTGCAAATGGGGAAAATAGCTTGAACTTGAAAATTGAGGAGATTAAACGCCAGTGCATAGCAACCCTTGGTAGGAGTATAGAAGATCATCAGAAACGGATGAACACAAAGAAACTTCTGAGCCGGATACATGACAATGTGGTCTTCTGTCTGGGGAATCTTGGCATTTGGGGTGCATTGCAAGCTAGTCGTATTCTTTTAAGCGGTGATCATTCTGAGAGGCATGAACTAGTGGAGGCAGAAGGAAATTCAAGTGATGAATCTGTGTGTAATAAATATCTTGCTCAGGCAGCTGAACTATTTAATTCACAATCTGTTGCTTCTGACAATTCATTACCAATTCCATACACTGTTCCACTTTGCATGATGTTAGGTGACAGTGTATCTGATCCATCTTCTGTGGAAATATTAAAAGAGCCGTTTTTCTCAACAAAGCTTTTGCGCCTCATTGGGATACTGTCCAACTTTAGGTTGCAACAAAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATACATTCTACAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTTTCTAGTAGGAGTCCATTCTGGACTGAAGAGTATGTCACGAAAGACCATGAACGTCATTGTTGAGAAGTTTCGCTCTGGAGAGCTGAATCTATTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTCATACGATTTGATCTTCCAGAAACTGTTGCTAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATACGAAGGAATTAGACATCATTAATGGTTTTGAAAGAGATGAATCCCGAATGAATATGGAAATTACTGTCCGAACATCCAATGAGACATACATCACCCCTGAGGAAAGAATATTCAGAGTTGAGTCATCTGGTGCTTCTGTCAGCTCGGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGACGAGTACTTTGAGCCCAAGCCAAATTTTTATTACTTTGATGATTTAGGGGGGATTGTCTGCCACATTACTTTGCCTTCCAATGCTCCAATACACCAAATTGTCAGTACACCACAGCTGTCTATGGAAGCTTCAAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTCTATAAATTAGGTGCTTTAAGTGATTGTCTCTTGCCAGAGCAAGATGATGCAGAGCCAGAGGAGCAAATTTTGGGTTCTTCTGATTCAGATGAGTGTGAAGAGGACATTTCAAGAGGAGAATTACATGAGATGCTTGTTCCTTCTGCCTTTGGACATTCATGGATAAATGAGAAAATTGTCTATCTCAACTCTTACTACATTAAATTTTGTCCCTGTCCAGAGGATAGGGACTACAGAAGGTTTGGTCTATTCATCATGACTCGTCTTCCAATGGAGGCTGAGAAACTGGAACTTGATCTACATCTTGCTCACGGTAGATCTGTGATGACAAAATTTATTCCATTTGGAGTTGTAGAATTTGACAAAGATGAGGTTAAGATGGCAGAGAATTTTCAAGAAATATTCCTCAAAATTATTCTTGATAGATTAGAATTTGCTTCTGAGTTTGTAGACTTGGCTAAGGTTGCTGAAACTCAGACAAGCACATCAACCTTCTACCTTTTGCTTCCAGTCATATTGCAAGAATATGATAATATCATGAAAGTAGATTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGCAGATACTGTGGACAAAAAAGTTTTCCCTTTGGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTTAGAGATGTTGAGAATAGTTTAGTGTATGCCCCACATAAGAAGCTCTTTTATTTTGTCACTAATATTAGCTATGAGAAGAATGGATTCAGTTCTTATAAAGATTCAGGCACTTCAAGATATGTGGACCACTTCCTTGAAAATCCTTGGAAGTTCGTTTCACATAATAATGCTACCTTGAAGTACTTCCTTGAAGGACGTCCTTGCCCGAGAGTTTGTAGCAAGGAAACTGAAGAAAGCATACACTTTTGTTTAAATTCTGATAAGGAACAAGGAAGAGCAACTGAAATCCGTTGTAATAAAAATCACCATTGGTTACATAGGAAAACAATTGCTGATGTTGTTGAAGCTCTGATTGGAGCATTCATAGTTGATAGTGGCTTTAAAGCTGCAATTGCCTTTCTTAAATGGCTAGGCATAGAAGTTGATTTTGAAGCGTCACAAGTTGTTAACATGTGCAGAGGAAGTGCTAGCTATTTTTCTCTTTCTGCTGATGTAGACATTCCATCCCTTGAACGTAAATTAGGACATCACTTTGTTCATAAGGGTCTGCTTCTCCAGGCATTTGTACATCCTTCTTACAGTAAGCATGGAGGAGGCTGTTATCAGCGGTTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATCTGTACTCAGCTTATCCGAAACTAAAACCTGGTCAATTAACAGATTTGAGATCATTGTCTGTTAATAACAAGGCATTTGCCTGTGTAGCAGTAGATCGCAGTTTTGATAAATTTCTTTTATGTGATTCAAGCGGCCTGTCTGAGGCAATAAAAAAATATGTGGACTATATTAGAAGACCTGTATCATGCAGAGGCATTAATGGAGAGCCAAAATGTCCCAAGGCCCTAGGTGACTTAGTGGAATCTTGTGTTGGTGCCATTCTTCTTGATTCAGGATTCAATTTGAACAAAGTTTGGAAGATTATGACTTCATTCTTGGATCCAATCATGAAATTCTCCTCGAGCTTGCAGCTTAGTCCAATTAGGGATTTGCAAGAACTTTGCCAATCTCACAATTTGGATTTAGGGTTTCTGCCATCAAAACTTACTAAAACTTTTTCTGTTGAAGCCAAAGTGACTGGAAATGCAGTGTTATCAAATGGCGGCACCATAACGGCATGGCGCCAGCCGCCGCATTACGTTATGGCCATTTGGCCTCTGTTCTGCAGCAGTCCTCATCCTTTTTCTTCTTCTCTTCTCCACGCGGTTCAGGCTCAAGGCTGGAAACCAAAGTCAAAAACTTTGGAAGATGTTCTGAAATCAACATTTAAGATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGATACCAATACAATTGGACAAGCAATGGTTAATGGAAACCTATGCAGCAAGTCTGACCCAGAAATTCGCCCTATCCGAGAGGTAGTTGGTATGTGCTCCCCATGTGTGAAACCTGTTGATCAACACCTTCAATCTTCTCCTAAGGGAAAGCTTAGTGAAACTTTTGAAAATCATGATTGTAGTAGTGACTCATCGAGGACAGGCTACATAAAAACTTTAAGAGCCTTAGTTATTTTATTCACTTTCAAGGTGACCTTGGAGATAGAAGAGGTCCCAGATACGATTTTTGAGTTTATTTTGGAACCTCAATCAAAGAAGAAAGATGCTGCAGAGAGTGCCGCTGAGGGTGCATTTTGGTACCTGGAACATGAAGGGTACCTGGTTAATGCTAATGGTTAA 4416 0.4031 MPDGESSTAGAGQPPMQSSSSVSDDGQSLSLSQVKIHEDPIMKDPKKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPKKDVCVFLAPTVALVHQQAKVIEDSTDFKVGTYCGSSKRLRRHQDWEQEIGQYEVLVMTPQILLHNLSHCFIKMEMIALLIFDECHHAQVKSNHPYAEIMKVFYKNNSTKVPRIFGMTASPVVGKGSSSEANLPKSINSLEHMLDAKVYSVEDKELQSFVTTPVINIYPYASTANGENSLNLKIEEIKRQCIATLGRSIEDHQKRMNTKKLLSRIHDNVVFCLGNLGIWGALQASRILLSGDHSERHELVEAEGNSSDESVCNKYLAQAAELFNSQSVASDNSLPIPYTVPLCMMLGDSVSDPSSVEILKEPFFSTKLLRLIGILSNFRLQQNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDFLVGVHSGLKSMSRKTMNVIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNTKELDIINGFERDESRMNMEITVRTSNETYITPEERIFRVESSGASVSSGYSISLLHQYCSKLPHDEYFEPKPNFYYFDDLGGIVCHITLPSNAPIHQIVSTPQLSMEASKRDACLKAIEELYKLGALSDCLLPEQDDAEPEEQILGSSDSDECEEDISRGELHEMLVPSAFGHSWINEKIVYLNSYYIKFCPCPEDRDYRRFGLFIMTRLPMEAEKLELDLHLAHGRSVMTKFIPFGVVEFDKDEVKMAENFQEIFLKIILDRLEFASEFVDLAKVAETQTSTSTFYLLLPVILQEYDNIMKVDWKTVKRCLCSPIFRHPADTVDKKVFPLDIHLQLANGYRSVRDVENSLVYAPHKKLFYFVTNISYEKNGFSSYKDSGTSRYVDHFLENPWKFVSHNNATLKYFLEGRPCPRVCSKETEESIHFCLNSDKEQGRATEIRCNKNHHWLHRKTIADVVEALIGAFIVDSGFKAAIAFLKWLGIEVDFEASQVVNMCRGSASYFSLSADVDIPSLERKLGHHFVHKGLLLQAFVHPSYSKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSSGLSEAIKKYVDYIRRPVSCRGINGEPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDPIMKFSSSLQLSPIRDLQELCQSHNLDLGFLPSKLTKTFSVEAKVTGNAVLSNGGTITAWRQPPHYVMAIWPLFCSSPHPFSSSLLHAVQAQGWKPKSKTLEDVLKSTFKMEPKLIGYDETPIDVTDTNTIGQAMVNGNLCSKSDPEIRPIREVVGMCSPCVKPVDQHLQSSPKGKLSETFENHDCSSDSSRTGYIKTLRALVILFTFKVTLEIEEVPDTIFEFILEPQSKKKDAAESAAEGAFWYLEHEGYLVNANG 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi694g00025 1471 SMART helicmild6 440 530 IPR001650 -
Sebi694g00025 1471 Gene3D - 49 304 IPR027417 -
Sebi694g00025 1471 Gene3D Ribonuclease III domain 1049 1220 IPR036389 GO:0004525|GO:0006396
Sebi694g00025 1471 Gene3D Ribonuclease III domain 913 1024 IPR036389 GO:0004525|GO:0006396
Sebi694g00025 1471 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Sebi694g00025 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 544 IPR027417 -
Sebi694g00025 1471 FunFam Endoribonuclease dicer-like 1 1049 1219 - -
Sebi694g00025 1471 ProSiteProfiles Ribonuclease III family domain profile. 1054 1198 IPR000999 GO:0004525|GO:0006396
Sebi694g00025 1471 SUPERFAMILY RNase III domain-like 987 1028 IPR036389 GO:0004525|GO:0006396
Sebi694g00025 1471 SUPERFAMILY RNase III domain-like 1053 1217 IPR036389 GO:0004525|GO:0006396
Sebi694g00025 1471 FunFam Endoribonuclease dicer-like protein 44 283 - -
Sebi694g00025 1471 Pfam Dicer dimerisation domain 594 678 - -
Sebi694g00025 1471 SMART ultradead3 45 250 IPR014001 -
Sebi694g00025 1471 ProSiteProfiles Ribonuclease III family domain profile. 995 1013 IPR000999 GO:0004525|GO:0006396
Sebi694g00025 1471 FunFam Endoribonuclease dicer-like 1 589 685 - -
Sebi694g00025 1471 PANTHER DICER-RELATED 62 929 - -
Sebi694g00025 1471 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 410 571 IPR001650 -
Sebi694g00025 1471 SMART riboneu5 1069 1221 IPR000999 GO:0004525|GO:0006396
Sebi694g00025 1471 Pfam Helicase conserved C-terminal domain 417 528 IPR001650 -
Sebi694g00025 1471 MobiDBLite consensus disorder prediction 10 34 - -
Sebi694g00025 1471 Pfam DEAD/DEAH box helicase 51 197 IPR011545 GO:0003676|GO:0005524
Sebi694g00025 1471 ProSitePatterns Ribonuclease III family signature. 1089 1097 IPR000999 GO:0004525|GO:0006396
Sebi694g00025 1471 Pfam Ribonuclease III domain 1089 1198 IPR000999 GO:0004525|GO:0006396
Sebi694g00025 1471 CDD RIBOc 987 1024 IPR000999 GO:0004525|GO:0006396
Sebi694g00025 1471 MobiDBLite consensus disorder prediction 1 36 - -
Sebi694g00025 1471 FunFam Endoribonuclease dicer-like 1 401 564 - -
Sebi694g00025 1471 Gene3D - 1416 1462 - -
Sebi694g00025 1471 CDD RIBOc 1070 1220 IPR000999 GO:0004525|GO:0006396
Sebi694g00025 1471 CDD DEXHc_dicer 47 246 - -
Sebi694g00025 1471 Gene3D Dicer dimerisation domain 590 685 IPR038248 -
Sebi694g00025 1471 Gene3D - 403 565 IPR027417 -
Sebi694g00025 1471 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 594 684 IPR005034 GO:0016891
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi694g00025 Sebi-Chr694 284774 304873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi694g00025 428 527 Eukaryotic Initiation Factors Gene Family AT3G19760 32.000 2.88e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi694g00025 K11592 - gmx:100818702 1583.16