Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi694g00017 ATGGCTTTTCAAGACCATTTCCAAAACGAAATATCTTTCCAGCGTTTCACAGAGGAGCAACAAGAGTTTACAGAGAATAGAGACATGCAACAACAGAGGCTGCCACCACCAACATGGCTCAACAACGCCACCAATCATCAACGTCATCAGCAGAATTTCCTTCACTTGCAAGCGGAGACAACAACAGAGAAAAGCAATAATTGTGAATCGGATGAGTTAAGGGAATACAAAGGTGACATTTTGGGACACCCCCTTTATGATCAGCTCTTATCAGCTCATGTTTCATGCCTAAGGATTGCAACCCCAGTGGACCAGCTTCCAAGAATCGATGCTCAGCTTCAACAGTCACAGCGTGTGGTGGAAAAGTACTCTCACTCTTCCTCCTCACTTGGAAATAATAATAGGGTGGTGGTAGATGAGAAGGAGCTTGATCAGTTTATGACGCATTATGTTCTGTTGCTCTGTGCCTTCAAAGAGCAACTGCAACAACATGTCCGTGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCAGGCGAAGGAACAGGTGCAACAATGTCTGACGATGAAGATGAGCAAGCAGAGAGCAATGGCAATTTATACGAAGGAAGCTGCCTGGATGGTGCTGATAGTCTTGGCTTTGGTCCTCTTGTCCCCACTGAGACTGAACGCTCTTTGATGGAGCGTGTCAGGCTTGAGTTAAAACATGAGCTAAAACAGGGTTACAAGAATAAGATTGTGGACATAAGAGAAGAGATTCTAAGAAAGAGACGAGCTGGGAAGCTCCCCGGAGACACCACCTCCCTTTTGAAAGCTTGGTGGCAAGCACATTCTAAATGGCCTTACCCTACTGAGGAAGACAAGGCTAGATTGGTGCAAGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCATCCTCTAGTAACTCCAAAAGCAAGCGCAAGAGCACTGCAGGCGAAACCAGTAACCCGAGCTTCATGTGA 1065 0.4573 MAFQDHFQNEISFQRFTEEQQEFTENRDMQQQRLPPPTWLNNATNHQRHQQNFLHLQAETTTEKSNNCESDELREYKGDILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSHSSSSLGNNNRVVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDEQAESNGNLYEGSCLDGADSLGFGPLVPTETERSLMERVRLELKHELKQGYKNKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSNSKSKRKSTAGETSNPSFM 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi694g00017 354 Pfam KNOX2 domain 137 187 IPR005541 GO:0003677|GO:0005634
Sebi694g00017 354 MobiDBLite consensus disorder prediction 323 354 - -
Sebi694g00017 354 Pfam Homeobox KN domain 286 325 IPR008422 GO:0003677|GO:0006355
Sebi694g00017 354 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 337 - -
Sebi694g00017 354 SMART HOX_1 268 333 IPR001356 GO:0003677
Sebi694g00017 354 SUPERFAMILY Homeodomain-like 268 333 IPR009057 -
Sebi694g00017 354 SMART ELK_2 246 267 IPR005539 GO:0003677
Sebi694g00017 354 Pfam KNOX1 domain 76 117 IPR005540 GO:0003677|GO:0005634
Sebi694g00017 354 Gene3D - 272 349 - -
Sebi694g00017 354 SMART KNOX2_2 133 188 IPR005541 GO:0003677|GO:0005634
Sebi694g00017 354 Pfam ELK domain 246 267 IPR005539 GO:0003677
Sebi694g00017 354 ProSiteProfiles 'Homeobox' domain profile. 266 329 IPR001356 GO:0003677
Sebi694g00017 354 ProSiteProfiles ELK domain profile. 246 266 IPR005539 GO:0003677
Sebi694g00017 354 MobiDBLite consensus disorder prediction 188 210 - -
Sebi694g00017 354 SMART KNOX1_2 74 118 IPR005540 GO:0003677|GO:0005634
Sebi694g00017 354 CDD homeodomain 269 330 IPR001356 GO:0003677
Sebi694g00017 354 FunFam homeobox protein knotted-1-like 3 isoform X1 267 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi694g00017 Sebi-Chr694 190460 195638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi694g00017 76 349 Homeobox Transcription Factor Family AT5G11060 81.022 4.53e-162 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sebi694g00017 KNOX2 4.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi694g00017 - - gmx:100803673 566.614