Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi694g00012 ATGGGTTCCTCCTCTAGTAGACTTGGCTCTGCCTCTCGCTCTCGCCCTTCTACTTCTAGTTCCACCACCAGCAGGGTCAACCGATTCAGATTATCTTCCCTTCTCTGTGGCACCTCCACCTCTCGCTCGGTTTATCAGATGGAAGAACATCCATCTGAGCTTCAGGTTGATTCAGCAAGAGATTTCGATGGTGAAATTCAGAAAGTCACAGCGGAATCGTCTTTATCATGTACTGAAGCCAGAATTAACTGTTGTCCCCATGCTGAAACTACAACCTCATCTGATATGAGAACTGAGTTCTGTGGGAATACTACTGTTGAAGGTTCTTCTAGAAATGTTGCAACAAGTAGTCAGAGGAAGTGCTTGTCTGAACGTAAGGAGCTAGTCCCTCCTTATCAGAAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGCAGTCAATACTGTTGATGATCCAGTGGTTAGTGGTGTCCCTCAAATCTCTTGTGAGACAATGCATCCAAGGAGTTCAAGCCCTCAAGAGCATGGAAATTCCAGTCCTGGTGAAATTTCTGTTGAGAATCACACTGGTCCATTCATATCTATCCAAAGTTCTTCTCCGAATCCTGTTCCTCAAGAGTCCAATATACCAACAACTTCTCCAGTGCCAGAAAATGAACCTCATCGCGAGACAATGCCTTCAGGTTTAGGTATTATTGTGTCCAATCGGGAAAGAGGACAGGGAAATGATGGTGTGCTTCAACTTGATGTGGTCACAATATCTTCCAACATTTTGTCTGGCAGCAATGCAGATGCCAATGATCATGATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATAGTCTTCTCCACTGGAGGTGCTGATGATCCAGGATCTCAAGATCGATGGCTTGTTGATTTTGGTAGTGATTTATCTAATGATGGGATTGGGGGTGGTTCTGGATATACGGGAAGTAGAATTCACAGATTGAATGATCGAATGCGACACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGCCTTGATGAGATTGGTCGGTGGAATTCTTCATGTCCATCAGGACTCCATGCAGATGGTATGTGCTCATGCGAGTCTTTCCCAATGCTTGAGGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTCTGTTTGAGTTGTTCAGATCGAACTATGATATCACTGACAGGGAAGTGTGCTTACTGGATAAGAGCATTTCAAGTGCAGATGCTCTGATCTGCATTTGTTTTTCTTCTTTTTGGCCTCTTTTCTACAAAACCAGGGAAAAACAATTCTTGTTCCTTATCTTCGCGTTGGAAACTTTTCAGTATGGGGTTTTAGATGAAATCCATCGGCAACCTGTATCACTTTCTCTATCCATGGTCTCACTCCCTGCACCAGAATCAATTGTTGACTCCTTCCCTCTGAAGTCTCACAAAAAGGTTGATGCAGCTGATGGAGGCAATGATGCTGAACAGTGTTACATATGCCTGGCGGAGTATGAAGAAGGGGACCAGATACGGGTTCTTCCTTGCAACCATGAGTATCACATGTCGTGTGTGGATAAATGGCTAAAGGAAATACACGGCGTTTGTCCTCTATGTCGTGGCAATGTTTGTGGAGGGTTCACAGAATCTTCTTCCCACTCAGAAGTGCAGTCTCATCATTGA 1746 0.4444 MGSSSSRLGSASRSRPSTSSSTTSRVNRFRLSSLLCGTSTSRSVYQMEEHPSELQVDSARDFDGEIQKVTAESSLSCTEARINCCPHAETTTSSDMRTEFCGNTTVEGSSRNVATSSQRKCLSERKELVPPYQKSSDPVSVNVSANKDAVNTVDDPVVSGVPQISCETMHPRSSSPQEHGNSSPGEISVENHTGPFISIQSSSPNPVPQESNIPTTSPVPENEPHRETMPSGLGIIVSNRERGQGNDGVLQLDVVTISSNILSGSNADANDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGSDLSNDGIGGGSGYTGSRIHRLNDRMRHSRSEIWERLRGGLDEIGRWNSSCPSGLHADGMCSCESFPMLEESSTRASISRIVMLAEALFELFRSNYDITDREVCLLDKSISSADALICICFSSFWPLFYKTREKQFLFLIFALETFQYGVLDEIHRQPVSLSLSMVSLPAPESIVDSFPLKSHKKVDAADGGNDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSSHSEVQSHH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi694g00012 581 ProSiteProfiles Zinc finger RING-type profile. 519 561 IPR001841 -
Sebi694g00012 581 FunFam Putative RING zinc finger domain superfamily protein 486 566 - -
Sebi694g00012 581 Pfam Ring finger domain 518 561 IPR001841 -
Sebi694g00012 581 MobiDBLite consensus disorder prediction 166 231 - -
Sebi694g00012 581 SUPERFAMILY RING/U-box 507 564 - -
Sebi694g00012 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 565 IPR013083 -
Sebi694g00012 581 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 579 - -
Sebi694g00012 581 MobiDBLite consensus disorder prediction 1 25 - -
Sebi694g00012 581 MobiDBLite consensus disorder prediction 166 222 - -
Sebi694g00012 581 MobiDBLite consensus disorder prediction 115 141 - -
Sebi694g00012 581 SMART ring_2 519 560 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi694g00012 Sebi-Chr694 139011 143000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi694g00012 461 574 C3H Transcription Factor Family AT5G45290 51.240 2.90e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi694g00012 - - gmx:100783722 594.349