Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi694g00007 ATGGGAAGTAATGCTACTGAAAAGATCCCTTGCAATAACAGCACTGAAAGTTCAGAAACCACTATTGAGATAAAGATTAAAACATTGGATTCACAAACTTACACCCTCAGAGTGGATAAACAGATGCCTGTTCCTGCTCTGAAAGAACAGATTGCTTCTTTAACTGGAGTGTTATCAGAACGGCAGCGCTTAATTTGCCAAGGAAAAGTTCTAAAGGATGACCAGCTTCTGTCTGCCTACCATGTTGAAGATGGTCATACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCACTGCCGGGAAGTTTGCCCAATCATTCAGTGACTGAACCAAATTCAAGCACAAGCCATGGTCATAGTAATCAAGTAGCCCCTGGTGTTTTTATTGAAACTTTCAATGTGCCTGTTCAAGGCGAAGGAGTTCCTTCAGAAATCAATAGGATTGTTTCTGCTGTTCTAGGCTCTATCGGACTTCCAAATTTTGCAAGTGGTGGTGAAGGGATTATTGTCAGGGAGCATGATTCTCAAGGCTTAGGAAGAGCTTCAGGTTCTAGTGGAATATCAGATTCATCTCAGCCTCAACATGAAAGATCGCGTAATACCTTTGGACTTCCAGCAGCAGTTTCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCCGATTCTTTGACAACAATGTCCCAATACCTAAGTCATATAAATCATGAATTTGATACAATTGTCAGAGAAGGGGGGAATGATGTCCAAGCAGCTGAGGCTCGTAGGAATGAAGAACTGGGATCTGTTTCTTCACGTTTGGGTTCAACAGCAGAAGGGCTTTCATCAACCGCATCCTTGGCAGGAGTGTTGCTTTCTACCAGACAAATGATCATTGAACGAGTTGGGGAGTGCCTACTTCAACTTGCAAGACAGCTGGAGAATCAAGCAGATGTAACTGATTCCTCGTTGCGATTAAACACTCAATCAAGAGCTTTGAGTACTGGAGTTTTATTTTATAACCTCGGTGCATTTTTACTTGAGCTTGGTCGCACAACTATGACATTGCGTTTGGGTCAAACACCGGCTGAAGCTGTAGTTAATGGTGGGCCTGCTGTTTTTATATCACCATCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCAAGCTTTGGTGCTATTCCTGTTGGAGCTTCACAATCTAACACAAGTGTAGGTAGCGTACTTGGCTCAAGTTTTTTCCCAAGGCGTATTGATATACAGATAAGACGAGGTACATCATCAACCACACCTGCTACCAATCAAGAAGAACGCAGTGATACACCATCTGCTCCAGTACAAAGAAATCCGGTGGAAAGTTCTGTTAATCAAGCAACCTCTAGGCGTCCAGATGCATCTATTAGTGGGGAGCCAGGAGTAAGGATAGTGCCAATTAGAACCATGGTTGCAGCAGTACCAGGTTCCTTAGGTCGTCCATCTTCAGAACCATCTGGTAACTCTGTAGGGCTTTACTATCCAGTTCTTGGGAGATTTCAACATGTATCTTCTGGGCATACAAATAATGAACAGGGTTCTGAACCAGCAAGTCAGCATCATGCTGCACAACGTTCAACTCCTGAGTCCACATTGCAAAGGCAAAGCATGGAAGATTCTGCAAGGAATGGAACCTCATCAACTCCAAACACAAGACAAGAGCAGTCAAATTCTCGTGTTGTAAATATCAATATTCTGGCAGCTGGTGGGTCCCAAAACAACCAAGAATCTGAGAGACAGATACCAAGTAGTGTACTTCAGTTTTTAAGGACACTCTTTCCTGGTGGAGAAATTCACGTTGAAGATTCAAGTTTACAAGGAACAACTGCAGGTTCTACCTCGGAGCATGCTACAACATCAATGGGTGCTGCCCAAGCCCAAGCCCAAGCCCCTGAAGCAGAACCCCGTGTTAGTGATGAAGGAATATTTTTGTCTAATATACTCCGTGAGATCATGCCTGTCATATCACAAGTAGGATCCGAGGGAAATTCTTCTGTAGATCAAATGGCTCAAGATTCATCGACCCAGACTAGGAATGTCCTAGTAGTTAAAACTCGGAATTCCAATTTTTGTATCCTTGGTTCAAACCCCATGAGGTTGAAACTGATGCTGGGACATCACGCAGACACAGTGGTTCTGAACCAAGCCCTCCAAATCCAAAACGTCAAAAGATGGAGTGATATTGAGGATAATGTACAATATGTGGTCGTGGAAGATTGTGATCATAAGAAACAAAATTCGAGGCGGATCTCTTGA 2277 0.4361 MGSNATEKIPCNNSTESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASLTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPLPGSLPNHSVTEPNSSTSHGHSNQVAPGVFIETFNVPVQGEGVPSEINRIVSAVLGSIGLPNFASGGEGIIVREHDSQGLGRASGSSGISDSSQPQHERSRNTFGLPAAVSLGSLQPPVIPDSLTTMSQYLSHINHEFDTIVREGGNDVQAAEARRNEELGSVSSRLGSTAEGLSSTASLAGVLLSTRQMIIERVGECLLQLARQLENQADVTDSSLRLNTQSRALSTGVLFYNLGAFLLELGRTTMTLRLGQTPAEAVVNGGPAVFISPSGPNHIMVQPLPFQPGASFGAIPVGASQSNTSVGSVLGSSFFPRRIDIQIRRGTSSTTPATNQEERSDTPSAPVQRNPVESSVNQATSRRPDASISGEPGVRIVPIRTMVAAVPGSLGRPSSEPSGNSVGLYYPVLGRFQHVSSGHTNNEQGSEPASQHHAAQRSTPESTLQRQSMEDSARNGTSSTPNTRQEQSNSRVVNINILAAGGSQNNQESERQIPSSVLQFLRTLFPGGEIHVEDSSLQGTTAGSTSEHATTSMGAAQAQAQAPEAEPRVSDEGIFLSNILREIMPVISQVGSEGNSSVDQMAQDSSTQTRNVLVVKTRNSNFCILGSNPMRLKLMLGHHADTVVLNQALQIQNVKRWSDIEDNVQYVVVEDCDHKKQNSRRIS 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi694g00007 758 MobiDBLite consensus disorder prediction 609 643 - -
Sebi694g00007 758 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Sebi694g00007 758 MobiDBLite consensus disorder prediction 609 633 - -
Sebi694g00007 758 FunFam Large proline-rich protein BAG6 14 107 - -
Sebi694g00007 758 CDD Ubl_ubiquitin_like 24 91 - -
Sebi694g00007 758 MobiDBLite consensus disorder prediction 101 120 - -
Sebi694g00007 758 SUPERFAMILY Ubiquitin-like 16 101 IPR029071 -
Sebi694g00007 758 MobiDBLite consensus disorder prediction 418 460 - -
Sebi694g00007 758 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Sebi694g00007 758 MobiDBLite consensus disorder prediction 510 565 - -
Sebi694g00007 758 Gene3D - 14 110 - -
Sebi694g00007 758 MobiDBLite consensus disorder prediction 178 198 - -
Sebi694g00007 758 PRINTS Ubiquitin signature 74 95 IPR019956 -
Sebi694g00007 758 PRINTS Ubiquitin signature 32 52 IPR019956 -
Sebi694g00007 758 PRINTS Ubiquitin signature 53 73 IPR019956 -
Sebi694g00007 758 MobiDBLite consensus disorder prediction 105 120 - -
Sebi694g00007 758 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 682 - -
Sebi694g00007 758 SMART ubq_7 22 93 IPR000626 GO:0005515
Sebi694g00007 758 MobiDBLite consensus disorder prediction 176 198 - -
Sebi694g00007 758 MobiDBLite consensus disorder prediction 416 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi694g00007 Sebi-Chr694 93813 102040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi694g00007 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 1.01e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi694g00007 K23390 - gmx:100783070 1019.99