Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi693g00017 ATGGCGTCTGCATTTACAATTACAACACTAACACTGTCAAATGTTCCGGGAAGCAGAGGCAGAATCAAAGCTTTGAACCCTAACCCTAACCCTAACCCTGCTATTATCGGGGTTAGGGGGTTTGGTGGTGCTGTGAATGTGAGTATGAATATGAATTGTTGTTCTCCACACACAAAAAAGGGTTCGGTAGTCTTTCGGGTGAGGGCCAGTGGCAGTTCAGAGGAAGTAGCAGGTCCACAGTCAAAAGTGACTCACAAAGTATACTTTGACATCAGTATAGGAAATCCAGTTGGGAAGCTTGCCGGAAGGATTGTCATTGGACTCTACGGTGACGATGTGCCCCAAACAGCAGAGAACTTCCGTGCCCTTTGTACAGGAGAGAAGGGTTCTGGCTACAAGGGTTCCTCCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGGGACTTTGACAAAGGAAATGGAACTGGAGGAAAAAGTATATATGGTCGTACTTTCAAGGATGAGAATTTTAAATTGTCTCATACTGGACCAGGAGTTGTTAGCATGGCAAATGCAGGTCCCAACACAAATGGGAGCCAGTTTTTCATATGCACTGTGAAGACACCATGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGCCATGGACATTGTTAGGTTGATCGAGTCACAGGATACAGATCGGGGTGACCGTCCTAGAAAGAAGGTAACCATCAGTGACTCTGGTGAGCTTCCAATTGCTTGA 759 0.4585 MASAFTITTLTLSNVPGSRGRIKALNPNPNPNPAIIGVRGFGGAVNVSMNMNCCSPHTKKGSVVFRVRASGSSEEVAGPQSKVTHKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGSGYKGSSFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEAMDIVRLIESQDTDRGDRPRKKVTISDSGELPIA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi693g00017 252 CDD cyclophilin_ABH_like 85 247 - -
Sebi693g00017 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 208 223 IPR002130 GO:0000413|GO:0003755
Sebi693g00017 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 137 149 IPR002130 GO:0000413|GO:0003755
Sebi693g00017 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 195 207 IPR002130 GO:0000413|GO:0003755
Sebi693g00017 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 108 123 IPR002130 GO:0000413|GO:0003755
Sebi693g00017 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 180 195 IPR002130 GO:0000413|GO:0003755
Sebi693g00017 252 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 86 249 - -
Sebi693g00017 252 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 99 245 IPR002130 GO:0000413|GO:0003755
Sebi693g00017 252 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 132 149 IPR020892 GO:0003755|GO:0006457
Sebi693g00017 252 SUPERFAMILY Cyclophilin-like 79 249 IPR029000 -
Sebi693g00017 252 MobiDBLite consensus disorder prediction 230 252 - -
Sebi693g00017 252 Gene3D - 74 251 IPR029000 -
Sebi693g00017 252 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 98 248 IPR002130 GO:0000413|GO:0003755
Sebi693g00017 252 FunFam Peptidyl-prolyl cis-trans isomerase 72 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi693g00017 Sebi-Chr693 318715 320787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi693g00017 102 246 U-box Gene Family AT5G67530 47.260 1.18e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi693g00017 K03768 - gmx:100777088 367.081