Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi692g00019 ATGATCAAACCTCAGAAGTTTACAACCCCAATCGACACCTCCGAATGGCCCATTCTCCTAAAAAACTACGAGCGCCTCAACGTACGCACCGGACACTACACCCCTCTCCCCTCCGGTTACTCCCCTCTCAAACGCCCTCTCACTGAGTACCTCAAGTACGGTGTTCTCAACCTTGACAAGCCCGCTAACCCTTCTTCCCATGAGGTTGTCGCTTGGATCAAACGTATCCTCCGTGTCGAAAAAACCGGTCACAGCGGCACCCTCGACCCCAAAGTCACTGGAAACCTCATTGTCTGCATTGACAGAGCCACCCGCTTGGTCAAGTCCCAACAGGGTGCTGGCAAAGAGTACGTTTGTGTTGCTCGCTTGCACTCCTCTGTCCCTGATGTCTCCAAGGTTGCTCGCGCCCTCGAGACCCTCACCGGTGCAGTGTTTCAACGGCCACCGTTGATTTCCGCCGTCAAGCGCCAGCTCAGGATCAGGACCATCTATGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCATTTGGTTGTTTTTTGGATTTCCTGTGAGGCTGGTACTTATGTTAGGACCATGTGTGTTCATTTGGGTTTGGTGCTTGGTGTGGGTGGCCACATGCAGGAGCTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAGGATAACATGGTCTCTATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTACCGGGATGAGACTTATTTGAGGAGGGTTGTCATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGATTGGTTGTCAAGGATTCTGCTGTCAATGCCATTTGTTATGGTGCCAAGTTGATGATTCCTGGCTTGCTCAGGTTTGAGAATGATATTGAGGTAGGGGAGGAGGTTGTGCTTATGACCACCAAGGGTGAAGCTATTGCTCTCGGGATTGCTGAGATGACTACTGCTGTCATGGCAACTTGTGATCATGGTGTGGTGGCCAAGATCAAGAGGGTGGTCATGGATAGGGATACCTATCCCAGGAAATGGGGTTTGGGCCCCAGGGCTTCCATGAAGAAGAAAATGATTGCTGAAGGGAAGCTGGATAAGCATGGCAAGCCAAATGAGAAAACTCCCCAAGAGTGGCTGAGGAATCTGGTTTTGCCCACTGGTGGGGATAGCATGATTGCAGGTATGGCTGCTGCGGATGAACCTGAAAAGGCCAAGAAAGAGACTTCTGTAAAAGAGGGTGAGAAGGATGCAGATGGGGAAGGGCGTAAAAGAAAGAAACACCAAAGTACTGATAGCCCTGTCTCCCTTCCTGCTAAGAAGGCGAAAGTTGATGAAGTTGAAGTGGTCGAGAAGCAGGAAACAGTGAAGCTGAAGAAAGTAAATGATGAAGCTGTGGAGGTTGAAGTTGAGAAGAAGGAGAAGAAGAAGAAAAAGAAGAAGGATAAAGAAAATGGTGAAGTGGCATCTTCAGATGAGGAGAAAGCTGAAAAGAAGAAGAAGAAGCATAAGGAAAGGTTGAAGAGGGTTCTCCAGAGTTAG 1533 0.486 MIKPQKFTTPIDTSEWPILLKNYERLNVRTGHYTPLPSGYSPLKRPLTEYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKMIAEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSMIAGMAAADEPEKAKKETSVKEGEKDADGEGRKRKKHQSTDSPVSLPAKKAKVDEVEVVEKQETVKLKKVNDEAVEVEVEKKEKKKKKKKDKENGEVASSDEEKAEKKKKKHKERLKRVLQS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi692g00019 510 MobiDBLite consensus disorder prediction 465 497 - -
Sebi692g00019 510 CDD PseudoU_synth_hDyskerin 52 234 - -
Sebi692g00019 510 SMART pua_5 261 335 IPR002478 GO:0003723
Sebi692g00019 510 CDD PUA_Cbf5 259 333 - -
Sebi692g00019 510 Pfam DKCLD (NUC011) domain 13 70 IPR012960 -
Sebi692g00019 510 NCBIfam uncharacterized domain 2 254 332 IPR004521 GO:0003723
Sebi692g00019 510 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 20 345 IPR004802 GO:0006396
Sebi692g00019 510 Coils Coil 490 510 - -
Sebi692g00019 510 ProSiteProfiles PUA domain profile. 260 335 - -
Sebi692g00019 510 FunFam H/ACA ribonucleoprotein complex subunit CBF5 46 252 - -
Sebi692g00019 510 MobiDBLite consensus disorder prediction 397 428 - -
Sebi692g00019 510 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 1 502 IPR004802 GO:0006396
Sebi692g00019 510 SMART DKCLD_2 12 70 IPR012960 -
Sebi692g00019 510 MobiDBLite consensus disorder prediction 396 443 - -
Sebi692g00019 510 MobiDBLite consensus disorder prediction 465 510 - -
Sebi692g00019 510 Pfam PUA domain 261 333 IPR002478 GO:0003723
Sebi692g00019 510 SUPERFAMILY PUA domain-like 260 341 IPR015947 -
Sebi692g00019 510 Pfam tRNA pseudouridylate synthase B C-terminal domain 191 257 IPR032819 -
Sebi692g00019 510 Gene3D PUA domain 13 344 IPR036974 GO:0003723
Sebi692g00019 510 Coils Coil 455 482 - -
Sebi692g00019 510 Gene3D Pseudouridine synthase 46 252 - -
Sebi692g00019 510 SUPERFAMILY Pseudouridine synthase 13 258 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Sebi692g00019 510 Pfam TruB family pseudouridylate synthase (N terminal domain) 74 190 IPR002501 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi692g00019 Sebi-Chr692 424689 426221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi692g00019 1 440 NAC Transcription Factor Family AT3G57150 84.773 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi692g00019 K11131 - gmx:100806355 826.239