Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi691g00013 ATGGACATCGATTCCTCAGGTGCTTCTTGTTGGCTCTACGATTATGGCTTTGATATCTCTATTGCTGCAGCTGACTTCATGGCTGCAGACTCTGGTGGTTTCTCCTGGGTTCCTCAGACTCAGACTGATCAGAGTCACACCTTTAAGGGTCCTTCGAGCTTGGAAATGGAATACTCACTGGATTCTACTGTCCTGGAAAATGGCCCTTCAAAGCGGTTAAGGACTGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTGCGAAGGGATAAACTAAATGAGAGGTTTCTGGAATTGAGTTCTATCTTGGAGCCTGGTAGACCACCCAAAACAGACAAGGTTGCTATATTAAGTGATGCTGTTCGAACAGTAACCCAATTAAGAAATGAAGCTGAGAAACTCAAGGAAATGAATGATGATTTACTTGAAAAAGTTAAAGAATTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGAATAAGCTGAAGCTAGACAAAGAAAAGTTGGAGCAACAGGTCAAATTAACAAATGTACAACCCAGTTTCCTCCCTAATGCTCTGGCTGCTAAAGGGCAACCTACTAGTCACAAGCTGGTACCTTTCATTGGTTACCCTGGAATTGCCATGTGGCAGTTTATGCCTCCTGCTGCAGTTGATACATCACAGGATCATCTGCTTCGACCTCCAGTTGCCTAA 702 0.4387 MDIDSSGASCWLYDYGFDISIAAADFMAADSGGFSWVPQTQTDQSHTFKGPSSLEMEYSLDSTVLENGPSKRLRTESCASGSKACREKLRRDKLNERFLELSSILEPGRPPKTDKVAILSDAVRTVTQLRNEAEKLKEMNDDLLEKVKELKAEKNELRDEKNKLKLDKEKLEQQVKLTNVQPSFLPNALAAKGQPTSHKLVPFIGYPGIAMWQFMPPAAVDTSQDHLLRPPVA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi691g00013 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 153 IPR036638 GO:0046983
Sebi691g00013 233 CDD bHLH_AtILR3_like 83 158 - -
Sebi691g00013 233 SMART finulus 84 135 IPR011598 GO:0046983
Sebi691g00013 233 Coils Coil 119 181 - -
Sebi691g00013 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 129 IPR011598 GO:0046983
Sebi691g00013 233 FunFam Transcription factor bHLH104 81 162 - -
Sebi691g00013 233 PANTHER BHLH TRANSCRIPTION FACTOR 6 233 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Sebi691g00013 233 Gene3D - 82 157 IPR036638 GO:0046983
Sebi691g00013 233 Pfam Helix-loop-helix DNA-binding domain 82 129 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi691g00013 Sebi-Chr691 204703 206217 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi691g00013 25 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.269 9.19e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi691g00013 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi691g00013 - - gmx:100806838 343.969