Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi68g00088 ATGACTAGCAAGAAGCATTCTGTTCCCTCTGTGATCCGTTTCTTTAAGATCATCACAACAACATGTCTTGAAGCTCAAAAGCTTAAGATTCCAAACAATTTCACTATGAAATATGGTGGTGATATGTCAAACCCAATACTTCTCAAGCCTCCAGATGGCACTGAATGGAAATTGAATTGGACTAAACATGATGGTGATATTTGGCTTCAAGAGGGTTGGGAAGAATTTGCTACACATTACTCCCTTGATTACGGACATATGGTGTTGTTTGAATACAAGGATACTTCTAATTTTGGGGTGCATATATTTGACAAGACTACCCTTGAAATACAATATCCTTTCCATGCCACTCAAGATGAACAGGACAACATTGACCAGATTAGTAATGAATCAGTTGAACTTTTGGATAATCTACCTCCCCCTACATGCAAGAAGACTACCTCCAAGTCATGTCCTCAACCACATAAGAAATTGAGGACTGCCACCACAAGTGGAGGTGTTGGAAGTAGCCCCAAATTACAAAATTCACCTCAACATGCCAATATAAAAGAGGATGTGAGTGGTACCACTCAATGCCAAAAAGTGGAGCAGTTAATTTTTAAAATTACTAGAGCTTTAAACAGAGCTGAAACCTTCAGATCTAAAAATCCCTCTTTCATTGTTGTCATGAAACCTTCCTATGTTGGTCGTGGAAACTTGAGTATCTCATCACAATTTGCAGAAAAATATTTGAAGGAAAATCAAAGGGATATCCTCCTTCAGGTCTTGGATGGGAGAACTTGGCATGAATCAGTTGAAGAACCACATTCCCCTTCACCACAAGGTGAGGCAACTCAACGAACTTCACTGCACCCCATCACAGGTGGAGCTCTGATAGAAGCTAATAAATTCACCTCAGAGAATCCCTTTTTCAAAGTCTATATAAAGCCAAGTTCTACAAAGATATACAGACCGCGTGTACCAGTTACCTTTCTCAATAAAAAGAAGAATACCTTGATGTTACAAATTGGAAAGAAATTGTGGCCTGTAAGAGTGCTCCGTTATCCATATGAAGGTTCAAGCAAGTTGTCTGGAGGTTGGACCCGATTTGCTAGAGAAAATAAATTGTTAGATGGAGATGTTTGTGTCTTTGAGCTCATCAACAACAGGAAAGATGCTGTGTTTGATGTTCATATTTTCAGAGGACACTGTTAG 1194 0.392 MTSKKHSVPSVIRFFKIITTTCLEAQKLKIPNNFTMKYGGDMSNPILLKPPDGTEWKLNWTKHDGDIWLQEGWEEFATHYSLDYGHMVLFEYKDTSNFGVHIFDKTTLEIQYPFHATQDEQDNIDQISNESVELLDNLPPPTCKKTTSKSCPQPHKKLRTATTSGGVGSSPKLQNSPQHANIKEDVSGTTQCQKVEQLIFKITRALNRAETFRSKNPSFIVVMKPSYVGRGNLSISSQFAEKYLKENQRDILLQVLDGRTWHESVEEPHSPSPQGEATQRTSLHPITGGALIEANKFTSENPFFKVYIKPSSTKIYRPRVPVTFLNKKKNTLMLQIGKKLWPVRVLRYPYEGSSKLSGGWTRFARENKLLDGDVCVFELINNRKDAVFDVHIFRGHC 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi68g00088 397 MobiDBLite consensus disorder prediction 137 180 - -
Sebi68g00088 397 Gene3D - 288 396 IPR015300 -
Sebi68g00088 397 Gene3D - 201 274 IPR015300 -
Sebi68g00088 397 SMART B3_2 14 106 IPR003340 GO:0003677
Sebi68g00088 397 SMART B3_2 303 396 IPR003340 GO:0003677
Sebi68g00088 397 CDD B3_DNA 303 394 IPR003340 GO:0003677
Sebi68g00088 397 CDD B3_DNA 13 104 IPR003340 GO:0003677
Sebi68g00088 397 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Sebi68g00088 397 PANTHER B3 DOMAIN-CONTAINING 5 390 - -
Sebi68g00088 397 Pfam B3 DNA binding domain 303 394 IPR003340 GO:0003677
Sebi68g00088 397 Pfam B3 DNA binding domain 14 105 IPR003340 GO:0003677
Sebi68g00088 397 Gene3D - 9 107 IPR015300 -
Sebi68g00088 397 SUPERFAMILY DNA-binding pseudobarrel domain 297 395 IPR015300 -
Sebi68g00088 397 SUPERFAMILY DNA-binding pseudobarrel domain 9 105 IPR015300 -
Sebi68g00088 397 SUPERFAMILY DNA-binding pseudobarrel domain 212 262 IPR015300 -
Sebi68g00088 397 ProSiteProfiles B3 DNA-binding domain profile. 303 396 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi68g00088 Sebi-Chr68 2254805 2272219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi68g00088 275 394 B3 DNA Binding Superfamily AT3G18990 36.800 2.21e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi68g00088 B3 1.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi68g00088 - - lja:Lj0g3v0187709.1 408.683