Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi68g00077 ATGAGCAATAACTCATCAGATCCCAAAGCTGGTGGTGCTCCTGAACTGTCACCTCCCCAAAACGGCAAGAGGGAGGGTGAGGATGGAGATGAGAAGCAGGTAAGTGCAAAGAAACAGAAGAGAGGTGAGGTTGCTGAGGAGCATAGGAATAAGGAGGAAATTAATTCAGATTATTCTGAACAAGATAAGAATTTTGAAGTTAAAAATAGCGAACCTCCTATCCATTGTGGTTCTCAAGAATCAGAAGATGATGGTGGCTCAGAGTCTGGTTCTGACAGAAGCTCTGATGAGGACAATGGGGAGATGGATATTGATGAGGGTGATAGTTCTGAAGAAAGTAATGAAGAGGAACAAAAGAAAAAGATGGAAGTTTTGCCTAAAACCCCAGCTAGTCTGAAAGAGAAAAATCCTGCATCAAGGACAATATATGTTAGAAACTTGTCATACAGTGTGGAACAGGCTGAAATGGAAAAACTTTTCAAAGATTGTGGAGAAGTTCTTGATATTCATCTCCATACAGATCGTGAAGGGAGGTTTAGAGGCTTTGGACACGTCAAGTTTTCAACGGCAGAAGCAGCAGAAAAAGCTCTTGAGTTGAATAATACAGAATTGTTGAAACGTCCCATCAAAGTTTGTATAGCTCGGGATACCCACAATAGAAGCAACTCAAGCAACTCATTGCATGATGCTGAAAGATTACAGTCTCAAACTGTATATGTAAAGGGTTTCGATACATCCCTTGTGGAAGGGAAGCCTAAAACCACAGCTTACCCAAAAGAAAATAGTGCTGCATCAAAATCAAAGACAATATGTGTTAGAAACTTGTCATACAGTGTGGAACGGGCTGATATGGAAAATCTTTTCAAAGATTGTGGAGAAATCGTTGATGTTCGTCTCCATACAGATAGCGAAGGGAGGTTTAAAGGCTTTGGACATGTCGAGTTTGCAATAGCAGAAGCAGCACAGAAAGCTCTTCAGTTGGATAATACGGAATTGTTGAAATGTCGCATCAAAGTTTTTATAGCTCAAGAAAAGGGAGAATATACCCGCAAGAGGAGTCTTAGCAACCCGAGCAACTCATTCCATGAGGCATCCCGTGTGGAAGAGAAGCCTAAATCCCCAGCTACGCGAATAGAAAACAATGCTGCATCGAAGACAATATATGTTAGAAACTTGTCATACAGTGTGAAACAAGCTGATGTGGAAAATCTGTTCAAAGGTTGTGGAGAAATTGTTGATGTTCGTCTTCATAAAGATCGTGATGGGAGGTTCAAAGGCTTTGGACATGTTGAGTTTGCAACACCAGAAGCAGCACAAAAAGCTCTTGAGTTGGATAATACACAATTATTGAAACGTCCCATCTATGTTCTTATAGCTCAAGAAAAGGGTGATTGTACCCGCAACAGAAGTTTTAGCAACTCGAGCAACTCATTCCGTGAGGCATCCGTTGCAGAAGAGAAGCCTAAATCCCCAGCTACGCGAAAAGAAAAACTTGCTGCATCAAAGACGATACGAGTTAGAAACTTATCATACAGTGTTGAACAGGCTGATATGGAAAATTTCTTCAAAGATTGTGGAGAAATTGTTGATATTCGTCTCCATACAAATCATGAAGGTTGGTTTGATGGCTTTGGACATGTTGAGTTTGCAACAGTAGAAGCAGCCCAAAAATTCATGGTTGTCTCCAAGATGTTTATAGCCTTGACTTTGGAATCTAATGTTGGGTTGATATCATAA 1737 0.4064 MSNNSSDPKAGGAPELSPPQNGKREGEDGDEKQVSAKKQKRGEVAEEHRNKEEINSDYSEQDKNFEVKNSEPPIHCGSQESEDDGGSESGSDRSSDEDNGEMDIDEGDSSEESNEEEQKKKMEVLPKTPASLKEKNPASRTIYVRNLSYSVEQAEMEKLFKDCGEVLDIHLHTDREGRFRGFGHVKFSTAEAAEKALELNNTELLKRPIKVCIARDTHNRSNSSNSLHDAERLQSQTVYVKGFDTSLVEGKPKTTAYPKENSAASKSKTICVRNLSYSVERADMENLFKDCGEIVDVRLHTDSEGRFKGFGHVEFAIAEAAQKALQLDNTELLKCRIKVFIAQEKGEYTRKRSLSNPSNSFHEASRVEEKPKSPATRIENNAASKTIYVRNLSYSVKQADVENLFKGCGEIVDVRLHKDRDGRFKGFGHVEFATPEAAQKALELDNTQLLKRPIYVLIAQEKGDCTRNRSFSNSSNSFREASVAEEKPKSPATRKEKLAASKTIRVRNLSYSVEQADMENFFKDCGEIVDIRLHTNHEGWFDGFGHVEFATVEAAQKFMVVSKMFIALTLESNVGLIS 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi68g00077 578 Gene3D - 247 350 IPR012677 -
Sebi68g00077 578 MobiDBLite consensus disorder prediction 468 497 - -
Sebi68g00077 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 344 IPR000504 GO:0003723
Sebi68g00077 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 385 461 IPR000504 GO:0003723
Sebi68g00077 578 MobiDBLite consensus disorder prediction 21 69 - -
Sebi68g00077 578 Gene3D - 351 470 IPR012677 -
Sebi68g00077 578 Gene3D - 75 228 IPR012677 -
Sebi68g00077 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 559 IPR000504 GO:0003723
Sebi68g00077 578 MobiDBLite consensus disorder prediction 482 497 - -
Sebi68g00077 578 SUPERFAMILY RNA-binding domain, RBD 490 559 IPR035979 GO:0003676
Sebi68g00077 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 387 454 IPR000504 GO:0003723
Sebi68g00077 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 210 IPR000504 GO:0003723
Sebi68g00077 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 559 IPR000504 GO:0003723
Sebi68g00077 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 338 IPR000504 GO:0003723
Sebi68g00077 578 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 237 358 - -
Sebi68g00077 578 MobiDBLite consensus disorder prediction 98 112 - -
Sebi68g00077 578 SMART rrm1_1 269 340 IPR000504 GO:0003723
Sebi68g00077 578 SMART rrm1_1 503 575 IPR000504 GO:0003723
Sebi68g00077 578 SMART rrm1_1 141 212 IPR000504 GO:0003723
Sebi68g00077 578 SMART rrm1_1 386 457 IPR000504 GO:0003723
Sebi68g00077 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 216 IPR000504 GO:0003723
Sebi68g00077 578 MobiDBLite consensus disorder prediction 77 97 - -
Sebi68g00077 578 SUPERFAMILY RNA-binding domain, RBD 383 474 IPR035979 GO:0003676
Sebi68g00077 578 SUPERFAMILY RNA-binding domain, RBD 130 226 IPR035979 GO:0003676
Sebi68g00077 578 Gene3D - 479 568 IPR012677 -
Sebi68g00077 578 MobiDBLite consensus disorder prediction 113 128 - -
Sebi68g00077 578 MobiDBLite consensus disorder prediction 351 375 - -
Sebi68g00077 578 MobiDBLite consensus disorder prediction 1 136 - -
Sebi68g00077 578 SUPERFAMILY RNA-binding domain, RBD 263 356 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi68g00077 Sebi-Chr68 1980386 1990379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi68g00077 141 555 Eukaryotic Initiation Factors Gene Family AT1G71770 25.180 6.30e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi68g00077 - - aprc:113868402 485.337