LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi68g00040	ATGAGGGGAAGGATGACGCCCAAAAATGCTGTGGAGGACGGCATGCGTAGAGGCAAGGACGTGCGAAGGAAGACATGTGTAGAGGAAGGGACGTTGCGAAACATGGCAGCGCATGACGCACAGAGGAAGGGGTGGTGGTCAGCAATGGCGGTGTTTGGAGGCACAAATATAGGATACAATGAGTACCCAGATGGTGCCCCAGAAATTATACAAGAAAGACTCACTGATATACCACCATCATATGTTGAGACCTACAAAAAATATACACGTCAAGGATCTCGTGTTCTTGCTCTGGCATACAAATCTCTTCCTGACATGACAACTGGTTGTGAGTACATTTTGAAGTTCTTTGGAGTTATTCTTCTCTATAGGAGTTGTTTAAACTCTAGGACAGCTTCTGCTGTCAGTGAAGCTAGAAGCTTGGATAGGGATATAGTGGAGAGTGGACTTACTTTTGCAGGTTTTGCGGTATTTAATTGTCCCATAAGATCAGATTCAGGCACTGTATTATATGAATTGAAAGGATCTTCGCATGATTTGGATCCATGGGATCACCAGCTCACCATGATTGACCGTAGGATTGGTGGATGGAATCCCATCATGGTGGCCTACTCTTGTGGCTTGTGGGTGACGGTTGAGAAAGAAAGACTAGGTTTGTATTTGCTTCTTGTATTTGACCTCTTCTCTGCTTCTTGTGGGGATGGTGCTTGGATGCTTGCTGGTTTGTTATTTACTTGTGTGCTCTGTTTTGTTCCCTGCCCTATGGTGATGATTACTGGTGACCAAGCTTTGACAGCTTGCCATGTTGCTAGCCAAGTTCATATCATATCAAAACCTACATTAATCCTTTCCCCAGCAAGTAATGGTGAAGGATACAATTGGGTATCCCCTGATGAGACTGAAACCATTTGCTACAGTGAGAAAAAGGTTCAATCTTTGGCAGAGACTCATGATTTGTGTGTTGGAGGTGATTGCATTGAGATGTTGCAACAGACATCAGCTCATCTTCTTGTCATTCCTCATGTGAAGGTTTTTGCTAGAGTTTCTCCTGAGCATAAAGAACTAATCATGACCACTTTCAAAACATTGGGACGGGTAACTTTGATGTGTGGGGATGGAACCAATGATGTTGGAGCTTTGAAGCAGGCCCATGTAGGAGTTGCTCTTCTGAATGTAATGCATCAAACCCAAAGTGGAAACTCCTCTTCAGATTCATCTGGGGAAGAACGTTCAAAATCTGTCAAGCAAAAGAAATCTAGGCCTGCACTGGAAACATCTGGAAAGACAGTTAGCACAATTGGAGAAGTCACTTCAAAAGCCAAAGTTGCTTCAAGATCAGATTCAACCAGCCATTCATCTGTTAACCATGTTGAGATACAACAACAGAAGCTGAAGAAGATGATTGATGAGCTTAATGAGGAAGGAGATGGTGGTGCTCCTATTGTCAAGCTTGGTGATGCCTCAATGGCATCTCCATTCACCGCAAAGCATGCATCTGTTGTTCCAACCACTGACATAATTCGTCAAGGTCGGAGTACCTTAGTGACAACCCTCCAGATGTTTAAAATTCTTGGCCTCAATTGCCTTGCTACTGCATATATGTTGAGTGTTATGTATCTGGATGGTGTCAAGCTAGGTGATTTACAAGCCACAATAAGGGATATGTTTACTGCTGCATTTTTCTTCTTCATATCAAATCCACGCCCTCTTCCCACTCTCTCAGCTGAACGCCCTCACACTAACATTTTTTGTGCTTATGTCTTCCTTTCACTCTTGGGACAGTTTTCTATTCATCTGTTTTTTCTGACATCATCTGTTAGAGAAGCTGGAAAATACATGCCAGATGAATGCATTGAACCAGATTCAGATTTTCATCCCAACCTGGTAAATACAGTTTCCTACATGGTTAGCATGATCATTCAGGTGGCAACATTTGCTGTGAACTATATGGGCCATCCCTTTAACCAGAGTATTCCTGAAAACAAACCCTTCTTGTATGCCCTTGTTGCTGCTGTTGGTTTCTTCACTGTTATCACATCTGATCTCTTCAGGGACTTGGATGACTGGTTGAAGTTGGTGTCATTGCCTCCAGGTCTGAGGGATAAACTATTGATTTGGGCGTTTCTAATGTTTTCTGTATGCTATTCATGGGAGAGGTTTTTGAGGTGGACCTTCCCTGGTAATGCTAAGATCCCAGTTTGGAAGGAGCCTCAACAAGTTGCTCTATCTAATTTAGAAAAGGAAAAACGGCTCTAA	2256	0.43	MRGRMTPKNAVEDGMRRGKDVRRKTCVEEGTLRNMAAHDAQRKGWWSAMAVFGGTNIGYNEYPDGAPEIIQERLTDIPPSYVETYKKYTRQGSRVLALAYKSLPDMTTGCEYILKFFGVILLYRSCLNSRTASAVSEARSLDRDIVESGLTFAGFAVFNCPIRSDSGTVLYELKGSSHDLDPWDHQLTMIDRRIGGWNPIMVAYSCGLWVTVEKERLGLYLLLVFDLFSASCGDGAWMLAGLLFTCVLCFVPCPMVMITGDQALTACHVASQVHIISKPTLILSPASNGEGYNWVSPDETETICYSEKKVQSLAETHDLCVGGDCIEMLQQTSAHLLVIPHVKVFARVSPEHKELIMTTFKTLGRVTLMCGDGTNDVGALKQAHVGVALLNVMHQTQSGNSSSDSSGEERSKSVKQKKSRPALETSGKTVSTIGEVTSKAKVASRSDSTSHSSVNHVEIQQQKLKKMIDELNEEGDGGAPIVKLGDASMASPFTAKHASVVPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYMLSVMYLDGVKLGDLQATIRDMFTAAFFFFISNPRPLPTLSAERPHTNIFCAYVFLSLLGQFSIHLFFLTSSVREAGKYMPDECIEPDSDFHPNLVNTVSYMVSMIIQVATFAVNYMGHPFNQSIPENKPFLYALVAAVGFFTVITSDLFRDLDDWLKLVSLPPGLRDKLLIWAFLMFSVCYSWERFLRWTFPGNAKIPVWKEPQQVALSNLEKEKRL	751

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi68g00040	751	NCBIfam	HAD-IC family P-type ATPase	341	390	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Sebi68g00040	751	SUPERFAMILY	Calcium ATPase, transmembrane domain M	419	726	IPR023298	-
	Sebi68g00040	751	MobiDBLite	consensus disorder prediction	396	456	-	-
	Sebi68g00040	751	Coils	Coil	454	474	-	-
	Sebi68g00040	751	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	59	164	IPR023299	GO:0000166
	Sebi68g00040	751	PANTHER	CATION-TRANSPORTING ATPASE-RELATED	60	725	IPR006544	GO:0006812\|GO:0016020\|GO:0019829\|GO:0140358
	Sebi68g00040	751	PRINTS	P-type cation-transporting ATPase superfamily signature	370	389	-	-
	Sebi68g00040	751	PRINTS	P-type cation-transporting ATPase superfamily signature	251	261	-	-
	Sebi68g00040	751	Gene3D	-	49	161	IPR023299	GO:0000166
	Sebi68g00040	751	MobiDBLite	consensus disorder prediction	408	422	-	-
	Sebi68g00040	751	Gene3D	-	253	407	IPR023214	-
	Sebi68g00040	751	SUPERFAMILY	HAD-like	254	389	IPR036412	-
	Sebi68g00040	751	MobiDBLite	consensus disorder prediction	423	456	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi68g00040	Sebi-Chr68	1217900	1223320	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi68g00040	255	751	Primary Pumps ATPases	AT5G23630	68.938	0.0	676

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi68g00040	K14950		-	gmx:100789385	808.905