Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi68g00029 ATGGCTATGGTTCCTGGTCTTTTTCATCCGATCAGTAGTTTGTGCGAGCGTCGTCAAAATTGGAGGTTAAGGGTAAAACTTGTGAGGCTGTGGAAAATGACTTCTGTGGCCAATCCCAATGACCCATATGCAACTCAAATGGTTTTCGTTGATGAAGAGGGTGGAAGGATTGAGGCAACGGTCCCCAAACAACACATGAGCAGATTTAATCATGCTTTGGTGGAGGGACAGATATATAACATCACGAATTTCGGCCTACTTCGTAACTCTGGGAAGTTCAGAGCAGTTGTCCATGAGTTTAAGTTGATATTCAATGCCACAACGAGGGTCATTCACACCCAAAATGTGACCATTCCCTTCTCTGGATTTGCTCTGACCAAGACTTGTGATATAAAGAAGACCAATGGGAGTTCAAATTATCTTTATGATTTCATGGGCATTGTTACTGCTATTTCGGAGGAGTTGAACTTAAGCAATGAGGGGAGGCAGACACGGTTCATGTTGCTTGATTTAGTGGATGAGATGGGACAAATTCGACTCGCTCTCTTTGGGGAAATGATTGATGTGGTTGCTGGATTCCTATCTCTCCCTCGATGTGGGCTCCCTGTACTCATAATACAATTGGCGAAGGTCAATCTGTACAAGGGTGAAGTTGGAATCCAAAATGTTTTCAATGCCTCCAAACTCTACTGGAACCCAGACATTGCTGAGGCTATTGAGTTTAAGAATGGATTAGCTGTCCATGAAATTGAAACTGATGTTGAGATTCGAACCATCTCTGATAGGAGCAGGCCTGTGTCAATGAAAGACGAGTTCCTCAAACTATATCCCAAAAAGACTGTGGCACAGCTTCAGGAGATGGATGAGGATGGGTTCTTTATCATTCTAGCCTCAATTGATCAAGTTATCCATGATGGATTTTGGTGGTACATGGCTTGTCCTTGCATGAAATCGGTTTCATATGATGATGGGGTTCCATTTTGTGAGGATTGTGATACTTATGTGTTTGATCTTACGCCAAGGTTTAGGCTAAAATTGGAAGTTTCTGATGGTTCAAAAAATGCCCAACTGATTTTATTCGACTCTGAATGCTGTGCATTGCTCAACAAGTCTTGTCGTGACATGTTGGCTGATCTTAAGGCAGTGAAATCTTCTGCTCATCCATCACGCATCTCTAACTTGGTTGGGACTGAGTTGCTTTTTCGAGTTGAGCGAAAGGATGATCCAACATTCACCTATGAGGAGTGCTTCCGAGTGAAGAGGGTGTGCCTTGATCCTGAAATTATCGCAGACTACAAAAGTGAATTGGATGATCAGACTCCAGTGCAGCTGAATTTTGCCCCACCGTTTACTAAGATTGGGGGTGGAGAGTGA 1374 0.4323 MAMVPGLFHPISSLCERRQNWRLRVKLVRLWKMTSVANPNDPYATQMVFVDEEGGRIEATVPKQHMSRFNHALVEGQIYNITNFGLLRNSGKFRAVVHEFKLIFNATTRVIHTQNVTIPFSGFALTKTCDIKKTNGSSNYLYDFMGIVTAISEELNLSNEGRQTRFMLLDLVDEMGQIRLALFGEMIDVVAGFLSLPRCGLPVLIIQLAKVNLYKGEVGIQNVFNASKLYWNPDIAEAIEFKNGLAVHEIETDVEIRTISDRSRPVSMKDEFLKLYPKKTVAQLQEMDEDGFFIILASIDQVIHDGFWWYMACPCMKSVSYDDGVPFCEDCDTYVFDLTPRFRLKLEVSDGSKNAQLILFDSECCALLNKSCRDMLADLKAVKSSAHPSRISNLVGTELLFRVERKDDPTFTYEECFRVKRVCLDPEIIADYKSELDDQTPVQLNFAPPFTKIGGGE 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi68g00029 457 Gene3D - 117 252 IPR012340 -
Sebi68g00029 457 Pfam Domain of unknown function DUF223 47 119 IPR003871 -
Sebi68g00029 457 SUPERFAMILY Nucleic acid-binding proteins 8 116 IPR012340 -
Sebi68g00029 457 SUPERFAMILY Nucleic acid-binding proteins 276 426 IPR012340 -
Sebi68g00029 457 SUPERFAMILY Nucleic acid-binding proteins 125 247 IPR012340 -
Sebi68g00029 457 CDD RPA1_DBD_C 281 439 IPR047192 -
Sebi68g00029 457 Pfam Replication factor-A C terminal domain 292 420 IPR013955 -
Sebi68g00029 457 CDD RPA1_DBD_B_like 143 242 - -
Sebi68g00029 457 Gene3D - 7 112 IPR012340 -
Sebi68g00029 457 Gene3D - 269 433 IPR012340 -
Sebi68g00029 457 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi68g00029 Sebi-Chr68 1095547 1097885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi68g00029 10 375 Core DNA Replication Machinery Family AT4G19130 22.308 1.29e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi68g00029 - - lja:Lj6g3v0884310.1 358.221