Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi68g00013 ATGTGGTGGGGAGAGAAGAAAAATACAAAAAGCAGATCTAAAACTGGCAGAGCCGCAGAGGGATTAGGGCACACAATAATCTGGAATGAGGGTTGGGTGAGAGTGGACAAAGAGGGAAGGCAAGGGACGATCGATGGCCATGGCTGTATGCATATGGCTTGCAGGAACACACAACATGCAAAGGGTGTGACGAGTGCGGCAATGCCGTGCGACTGTGACGACCATTCTGCTGTAGTAACCCTCAAGTCAGTGTTTCTTGTGAGTAAGCTTGCTCAAATAAATCATCAAACCCTAAACCCAAGGAAAGTTTGTCTCTCCATGCAAAAGGTCAAGGAAGCTGCAGCTAGCAAAGAGGGGAAAGATATGGAAATGGAAGGGAGTACTCGTGATGCAACAAAGGAGGAAACCCTACCACCAGGGTTTCGATTTCATCCTACCGATGAAGAACTTATCTCTTACTATCTCATAAACAAGATTTCAGATTCTACTTTTACTGGCAAAGCAATAGCTGATGTGGATCTCAACAAATGTGAGCCATGGGAGCTGCCAGGAAAGGCAAAGATGGGGCAAAAGGAATGGTACTTTTTCAGTCTAAGAGATAGAAAATACCCTACGGGTGTGAGAACCAATCGAGCAACAAACACTGGGTATTGGAAAACCACAGGGAAAGACAAAGAGATATTCAACAGTGTTACTTCAGAGTTGGTTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGAAGGGCTCCCAGAGGAGAGAAAACCAACTGGGTCATGCACGAATACCGCATTCATTCAAAATCAAGCTTCAGAACCAACAAGCAGGATGAATGGGTGGTATGCCGGGTATTCCGCAAGAGTGCTGCTGGTGCAAAGAAGTACCCTTCTTCCAACCCAACCAGAGGAGCAGTGAATCCTTATAGTTTGGAAGTTGGTACAAGCATTGTTCCACCACCAATGATGCAACTAGGAGATCCTGCTGCTGCTCATTTCCTTTATGGAAGGAATTACATGAGCAATGCAGAGCTAGCTGAAGTTACTAGGGTCCTGAGAGGATCAACCAGTAGTAGTACTATCAACCTACCACCAATGCAGCCCCATTTCAACTACCCACCACCCCCACCTGGAGGAGGAGGATTCACCATTTCAGGGCTTAACTTGAACCTTGGAGGAGGAGGAGCAGCAGAAGCCACAAGTACACAACCAATTTTGATGCCACCCCCACAGCCACACACTATGGATTTCAGTTCCACCAATAATGGATTTCAGTATAATGGTGCAGAAATGAGCAATAATGCAAATCCTCATGCCAATAGCAGGTACATGGGTGGTATGGACCATTGCGTGGATCTTGACAATTACTGGCCTTCCTACTAA 1377 0.459 MWWGEKKNTKSRSKTGRAAEGLGHTIIWNEGWVRVDKEGRQGTIDGHGCMHMACRNTQHAKGVTSAAMPCDCDDHSAVVTLKSVFLVSKLAQINHQTLNPRKVCLSMQKVKEAAASKEGKDMEMEGSTRDATKEETLPPGFRFHPTDEELISYYLINKISDSTFTGKAIADVDLNKCEPWELPGKAKMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSFRTNKQDEWVVCRVFRKSAAGAKKYPSSNPTRGAVNPYSLEVGTSIVPPPMMQLGDPAAAHFLYGRNYMSNAELAEVTRVLRGSTSSSTINLPPMQPHFNYPPPPPGGGGFTISGLNLNLGGGGAAEATSTQPILMPPPQPHTMDFSSTNNGFQYNGAEMSNNANPHANSRYMGGMDHCVDLDNYWPSY 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi68g00013 458 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 134 340 - -
Sebi68g00013 458 Gene3D NAC domain 146 290 IPR036093 GO:0003677|GO:0006355
Sebi68g00013 458 ProSiteProfiles NAC domain profile. 137 286 IPR003441 GO:0003677|GO:0006355
Sebi68g00013 458 FunFam NAC domain-containing protein 100-like 146 290 - -
Sebi68g00013 458 Pfam No apical meristem (NAM) protein 138 264 IPR003441 GO:0003677|GO:0006355
Sebi68g00013 458 MobiDBLite consensus disorder prediction 115 141 - -
Sebi68g00013 458 SUPERFAMILY NAC domain 132 286 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi68g00013 Sebi-Chr68 251383 256468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi68g00013 122 458 NAC Transcription Factor Family AT2G24430 55.028 7.85e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi68g00013 NAM 2.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi68g00013 - - lja:Lj1g3v2035130.1 488.419