Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi68g00002 ATGATTGAACCTACTTTCTGGGAGAAATTGAAAGGAGATATACCTCAGAGTTGTGTGCTTATAGATCCTGCTGAGAATGTATTCCCTGTTTCGATAGTTGATAATGGTCATAATGTTGCGTTTGTTAAGGGCATTGATAACATTTGTAGATTCTATAGGCTTCAAGAAACTCATGACATTTTGTGTACTTACTTTGGAGATGTTGAATTCGAAATACAAATATTGAATGGTAACAATGAGTTAGTAAAGTGTCCTGAGATTGTAAACAATGGGGTGCCTATAGAGGTGTCTGATACTGATTCTATTGAAGATCTTGGACCTGTCCTTTTGTGGAGGGTAAATCTGTCTAAGGCTGCTGCTTCGGGTAAAAATGTAATGCCTATACCTGCTAGGTTAGTGACAAGTCTTCTAGATGGAACCCAAACATATGTTTATATCATAGATGAGGACTCTAATCGCACATCCTGCAAATTGTTGAGACCTAAAAGGAGGAGAACTGAGCGGTACATAGCTGGTAGTTGGTGTCAGTTTATTCGGGGAAAGAACTTGAAAGAGGGGGATGTTCTTGGTTCTTACTCCAATCTTGTTGGGAATTCTTTCCCAATAGGTATTAGTTCAAAAGGAGATAGTGCTGTCTTTGAAAGAAATGTGAACACAATGGTTAGATTTTATGGGCTGAATAGAAAGCATAGTGGTCTATTTTGCTATAAGGGTGGGAACCAATTCTATATAAGGGTGGGAAATCGTTACGGGGTTGAAATTAAATATCCCCAAAAGCCAAGTGAGGTAGTGGAAATATCTTCAGATGATAGTGAAAGTGACCATGAAGGTCATGTCGATTCTGTTGATGATGGCAGTGATCCTGAGGATTTCCCTTTCTGGATTATGACAATGTCCAAGTCATCTGCTTCAGGGAGGAATGCTTTGCCTATTCCTGCAAAATTTGTCAAAGAGGGGCTTCTGCAAAGTCAGCGGGATTTGACTTTAAGACTTGACAACGGTGAACAGATTCTTTGCAAAATAATTAAAGGTTCTAGGAGGCGGAATGAACGATATCTTGGTAGTGGTTGGTACAAGTTTTGCCGCGACAAAAAATTCAAGGAGGGAGATATGTTGTTGTTTTATTCAAAAGGCAATCCTTACAATTTGTGTGTTAAGATAAAGCGCTCCTAA 1173 0.3913 MIEPTFWEKLKGDIPQSCVLIDPAENVFPVSIVDNGHNVAFVKGIDNICRFYRLQETHDILCTYFGDVEFEIQILNGNNELVKCPEIVNNGVPIEVSDTDSIEDLGPVLLWRVNLSKAAASGKNVMPIPARLVTSLLDGTQTYVYIIDEDSNRTSCKLLRPKRRRTERYIAGSWCQFIRGKNLKEGDVLGSYSNLVGNSFPIGISSKGDSAVFERNVNTMVRFYGLNRKHSGLFCYKGGNQFYIRVGNRYGVEIKYPQKPSEVVEISSDDSESDHEGHVDSVDDGSDPEDFPFWIMTMSKSSASGRNALPIPAKFVKEGLLQSQRDLTLRLDNGEQILCKIIKGSRRRNERYLGSGWYKFCRDKKFKEGDMLLFYSKGNPYNLCVKIKRS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi68g00002 390 SUPERFAMILY DNA-binding pseudobarrel domain 290 384 IPR015300 -
Sebi68g00002 390 ProSiteProfiles B3 DNA-binding domain profile. 294 390 IPR003340 GO:0003677
Sebi68g00002 390 SUPERFAMILY DNA-binding pseudobarrel domain 4 76 IPR015300 -
Sebi68g00002 390 SMART B3_2 295 390 IPR003340 GO:0003677
Sebi68g00002 390 MobiDBLite consensus disorder prediction 265 287 - -
Sebi68g00002 390 Gene3D - 282 390 IPR015300 -
Sebi68g00002 390 Gene3D - 107 190 IPR015300 -
Sebi68g00002 390 Pfam B3 DNA binding domain 296 389 IPR003340 GO:0003677
Sebi68g00002 390 CDD B3_DNA 297 389 IPR003340 GO:0003677
Sebi68g00002 390 MobiDBLite consensus disorder prediction 265 285 - -
Sebi68g00002 390 PANTHER B3 DOMAIN-CONTAINING 293 387 - -
Sebi68g00002 390 SUPERFAMILY DNA-binding pseudobarrel domain 110 189 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi68g00002 Sebi-Chr68 27641 29965 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi68g00002 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi68g00002 - K19403 lja:Lj0g3v0086279.1 62.003