Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi689g00016 ATGGTTTGCGTGATGAGCTTCTTGAGGCCTTCTGCATTGTACCAGTTTCTGATCAGTTATCCTTCCCTGCGATGGATGCCGTGTCAGAGTTGGGGGTTCCTTCGATGGCCGGGTCTTGACGGGTTCTCGAGGCTTTTGGTGATTGTGCTTCTCTGGTCTACCTTCTCCGAGCTTCGCTACATACCCTCTTCTTCTATGTACCCTACCCTTCGTGTTGGCGATCGAATTATTGTCGAAAAGGCTTCATATTATGTCAGGAGTCCTGCTATACATGATATTGTAACATTTCGAGATCCAACACAGCTTTCTGGAGACAACACGGATGTTGTTTTTATTAAGAGAGTTGTTGCAAAAGCAGGAGACACTGTTGAGATTCATCAAGGGGGTCTCTATGTTAATGGCATTGCTCAGAAGGAAGATTTTGTATTACAGCCTCCAACATACACATTGAATTTAACTTATGTGCCCGAAGGCCATGTTTATGTGTTGGGGGATAATCGTAACAATAGCTATGATTCCCATGTATGTTAA 531 0.4407 MVCVMSFLRPSALYQFLISYPSLRWMPCQSWGFLRWPGLDGFSRLLVIVLLWSTFSELRYIPSSSMYPTLRVGDRIIVEKASYYVRSPAIHDIVTFRDPTQLSGDNTDVVFIKRVVAKAGDTVEIHQGGLYVNGIAQKEDFVLQPPTYTLNLTYVPEGHVYVLGDNRNNSYDSHVC 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi689g00016 176 CDD S26_SPase_I 57 173 IPR019533 GO:0004252|GO:0006465
Sebi689g00016 176 ProSitePatterns Signal peptidases I serine active site. 63 70 IPR019756 GO:0004252|GO:0016020
Sebi689g00016 176 PANTHER SIGNAL PEPTIDASE I 42 175 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi689g00016 176 Pfam Signal peptidase, peptidase S26 45 174 IPR019533 GO:0004252|GO:0006465
Sebi689g00016 176 Gene3D Umud Fragment, subunit A 63 176 - -
Sebi689g00016 176 NCBIfam signal peptidase I 45 174 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi689g00016 176 PRINTS Bacterial leader peptidase 1 (S26A) family signature 54 70 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi689g00016 176 PRINTS Bacterial leader peptidase 1 (S26A) family signature 155 174 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi689g00016 176 PRINTS Bacterial leader peptidase 1 (S26A) family signature 111 123 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi689g00016 176 ProSitePatterns Signal peptidases I signature 3. 160 173 IPR019758 GO:0004252|GO:0016020
Sebi689g00016 176 FunFam Peptidase/ serine-type peptidase 63 176 - -
Sebi689g00016 176 SUPERFAMILY LexA/Signal peptidase 55 174 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi689g00016 Sebi-Chr689 282184 286446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi689g00016 66 174 MADS-box Gene Family AT1G29960 30.000 7.87e-06 41.6