Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi685g00027 ATGTTGTGGTCATGTCACTGTGCACTAGGAGACCCTCAAATCCGTTTACTGAACAAGGGTTGCAGCCAATACAACGCAACTAACTTGAGAAGCTTCTACCAAAATCTAAACGCAACTTTGGCAGACTTGAAAGCACAAGTGAGCAACCAAAGCAAGCACTTTGCCACAGCACAACAAGCCAGGGGAGCAGACCCTGTTTATGCTATGTTTCAATGTAGGAATTACCTCTCCAACGCTGACTGTGCCGCCTGCTTCACTACCGCCGCTGCACAAATCCGCAACTGCTCCGCCGGAGCCAATGGTGCCCGTGTCATTTATGATGGTTGCTTACTTAGGTACGAGAGCAATGGCTTAATCTTCAACCAAACTACTCTGCCTGGAAATAGTATGATTTGTGGAAATGAAACTACAAAAGAAGCCACCGCTTTTGGTGCAAGTGCACAACAAGTGCTAATGGATCTACAAATAGCAACACCCAAAATTACTGGTTTCTTTGCAGCTACCAAGACACCAGTGGCTAATGGTTCAATCTATGCCATTGCACAATGTGCTGAAACTGTCTCAGAAAGTGGTTGTTTGGATTGTTTAACAGTTGGATACAACAACATAAAAAGTTGTTTTCCTAATACAGATGGTAGAGCATATGATGCTGGGTGTTTTATGAGATACTCAGACACATCATTCTTTGCTGACAACCAGACCATTGACATCACACCCTTATTAAAACAAGATGTAGGGGGTTCAAGCAAGAAGGGGGCCATTATTGGGGGTGTTGTTGGAGGTGTAGGTCTTGTTGTGATCCTTCTTGCATTATTTGTTTGGCTTAAGCAATACAAGAAACCAAAGAGAATTCCTAGAGGTGACATATTGGGAGCAACTGAGTTGAGAGGTCCAGTTATCTACAGCTATAAAGATTTAAAGTCTGCAACAAAAAATTTTAGTGATGAAAATAAACTAGGAGAAGGAGGATTTGGAGATGTATATAAGGGCACTCTGAAAAATGGTAAAATTGTGGCAGTCAAGAAATTAATTTTAGGCCAATCCAGTAAGATGGATGAACACTTTGAAAGTGAAGTCAAGCTCATAAGCAATGTTCATCATAGGAATCTAGTTCGACTTCTTGGATGTTGCAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAGCAGCCTTGATAGATTCTTATTTGGTGAAAAGAAAGGTTCTCTCAATTGGAAATACCGATATGACATAATTTTAGGCACAGCAAGGGGTTTAGCCTATTTACATGAGGATTTCCATGTTTGCATCATACATAGAGATATAAAGACTGGCAATATCCTCTTGGATGATGATCTTCAGCCTAGAATTGCTGATTTTGGGTTGGCAAGACTTTTACCACAGGACCAATCTCATGTCAGCACAAAATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAGCTATCAGAGAAGGCTGATACCTACAGCTTTGGTGTTGTAGTCCTAGAAATTGTAAGTGGCCAAAAAAGCAGTGAAATGAGGGCTGATGCTGATGGGGAATTCCTCCTTCAAAGGGCATGGAAACTATATGAGGAAGATATGCACTTGGAGTTGGTTGACAAGACATTGAATGTTGAAGAATATGATGCAGAAGAAGTGAAGAAAATTATAGAAATTGCTTTATTGTGCACTCAAGCATCGGCTGCTGCAAGGCCAACAATGTCTGAAATAGTAGTACTACTCAAAAGCAAGAACCTATTGGAGCATATGAAGCCATCCATGCCTGTCTTTGTTGAATCTAAT 1812 0.4111 MLWSCHCALGDPQIRLLNKGCSQYNATNLRSFYQNLNATLADLKAQVSNQSKHFATAQQARGADPVYAMFQCRNYLSNADCAACFTTAAAQIRNCSAGANGARVIYDGCLLRYESNGLIFNQTTLPGNSMICGNETTKEATAFGASAQQVLMDLQIATPKITGFFAATKTPVANGSIYAIAQCAETVSESGCLDCLTVGYNNIKSCFPNTDGRAYDAGCFMRYSDTSFFADNQTIDITPLLKQDVGGSSKKGAIIGGVVGGVGLVVILLALFVWLKQYKKPKRIPRGDILGATELRGPVIYSYKDLKSATKNFSDENKLGEGGFGDVYKGTLKNGKIVAVKKLILGQSSKMDEHFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGEKKGSLNWKYRYDIILGTARGLAYLHEDFHVCIIHRDIKTGNILLDDDLQPRIADFGLARLLPQDQSHVSTKFAGTLGYTAPEYAIHGQLSEKADTYSFGVVVLEIVSGQKSSEMRADADGEFLLQRAWKLYEEDMHLELVDKTLNVEEYDAEEVKKIIEIALLCTQASAAARPTMSEIVVLLKSKNLLEHMKPSMPVFVESN 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi685g00027 604 Gene3D Phosphorylase Kinase; domain 1 290 389 - -
Sebi685g00027 604 ProSiteProfiles Protein kinase domain profile. 313 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi685g00027 604 CDD STKc_IRAK 319 585 - -
Sebi685g00027 604 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 67 602 - -
Sebi685g00027 604 Pfam Protein kinase domain 314 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi685g00027 604 ProSitePatterns Protein kinases ATP-binding region signature. 319 342 IPR017441 GO:0005524
Sebi685g00027 604 FunFam Cysteine-rich receptor-like protein kinase 2 278 389 - -
Sebi685g00027 604 Gene3D Transferase(Phosphotransferase) domain 1 390 596 - -
Sebi685g00027 604 FunFam Cysteine-rich receptor-like protein kinase 2 13 118 - -
Sebi685g00027 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Sebi685g00027 604 Pfam Salt stress response/antifungal 21 115 IPR002902 -
Sebi685g00027 604 Pfam Salt stress response/antifungal 132 225 IPR002902 -
Sebi685g00027 604 FunFam Cysteine-rich receptor-like protein kinase 2 390 592 - -
Sebi685g00027 604 Gene3D - 13 117 IPR038408 -
Sebi685g00027 604 Gene3D - 128 228 IPR038408 -
Sebi685g00027 604 SMART serkin_6 313 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi685g00027 604 SUPERFAMILY Protein kinase-like (PK-like) 297 591 IPR011009 -
Sebi685g00027 604 Coils Coil 33 53 - -
Sebi685g00027 604 FunFam Cysteine-rich receptor-like protein kinase 2 127 228 - -
Sebi685g00027 604 ProSiteProfiles Gnk2-homologous domain profile. 14 118 IPR002902 -
Sebi685g00027 604 ProSiteProfiles Gnk2-homologous domain profile. 125 228 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi685g00027 Sebi-Chr685 487450 493094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi685g00027 1 602 Receptor kinase-like Gene Family AT1G70520 37.622 5.63e-125 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi685g00027 Pkinase 5.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi685g00027 - - gmx:100813585 989.564