Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi685g00025 ATGGCGATCTCGAACAACGTGCCACCGTTGCAGGTTAACTCCAATTGGACTTTGCTTCTGGGTCATGGGGTTGTTTCTGGGGTTCTTACTGTAGTGTTGATGTTGGTTCTGGTATGGAGTGCATTGGCAAGGTGGAGGAAGATATTGGGGAAATGCAATGGCTTGAAGCAAATTGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCTTGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTTGCTGCTACAACTAACAGAGAAGTTGATGGGCACATACCCAATTACCCCAGCTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTCACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTACAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGCATCCCAAGTAAGCAGCCCTCAAATTACTTTTGCAAGACTTTAACAGCCAGTGACACCAGCACACATGGAGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCATTGGATTTCTCTCAACAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGACGTTGAATGGAAGTTTAGACATATTTTTCGGGGGCAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTAGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAACTTCTTTTGGGAATACGTCGAGCCAACCGACCACAAACTGTAATGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACAGTGTTCTATAATCCAAGCTACATCATGGGCAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGAATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGCAGATACATGGGTACAATAACTGGCATAAGTGATCTGGATACTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGAGTATCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCATTATTTCCCCTCAGATTGAAACGACCATGGCATCCTGGCACCTCATCTATGCATGATGGCAGAGATGAAACAACTAATGGACTAATGTGGCTGAGAGGTGGACCTGTAGACCAAGGTCTTAATTCCCTAAATTTTCAAGGTGCTGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCAACCTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTGCAGAACCTAGGTAGTGGATATCTCATGAGGCCACAAATAATGAATTTTCAACAACCTTTCCATTATCTTCAACAATCTGGAAACAGTAATTCTCCTTTGCAACTTCAGCAGCAGCAAGCAATTCAACAATCAGTGTCTTCTAATATGCTGCAGCCACAAGCCCAAGTACTGACAGAGAACCTGTCTCAGCACCTACTTCAGAAATCACATAACAATCAAGAAGTCCAACCACAACAGCAGCAACATACTTATCAAGATACACTTCTAATTCAAAGTGAACAGCTCCATCAGATACAACACACCAGTGTGCCTTCACCATCATATTCCAAACAAGATTTCTTGGATTCAAGCATAAAGTCCCCCGCTTCAGTTCCCCCTGAACAAAACATGCTTAGTTCACTTTGTCATGAAGGAAGTGGGAGTCTCTTGAATTTATCCAGAAGCGGTCAGTCCTTGCTGGCTGAACAGTTACCCCCAACAGCCATGGACTGCAAAGTTTACAAATCAGGGTCAGTGGGGCGCTCGCTTGACATCTCCAGGTTCAGCAGCTACCATGAGCTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTACAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTGAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAAATGGGAGAACAAGCGGTGGAATCGCTTGCTCAAAGTTCGGGACAAAGGCTAAATGGAACTGCTGTGGAGTCTCACCACATTGTCTCTGGACCACCATCAATTGGCTCCCTTGAATACTAA 2322 0.4505 MAISNNVPPLQVNSNWTLLLGHGVVSGVLTVVLMLVLVWSALARWRKILGKCNGLKQIEGGEKKCLNSELWHACAGPLVSLPTAGTRVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPSYIMGRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSMHDGRDETTNGLMWLRGGPVDQGLNSLNFQGAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAGLQNLGSGYLMRPQIMNFQQPFHYLQQSGNSNSPLQLQQQQAIQQSVSSNMLQPQAQVLTENLSQHLLQKSHNNQEVQPQQQQHTYQDTLLIQSEQLHQIQHTSVPSPSYSKQDFLDSSIKSPASVPPEQNMLSSLCHEGSGSLLNLSRSGQSLLAEQLPPTAMDCKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLQDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLAQSSGQRLNGTAVESHHIVSGPPSIGSLEY 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi685g00025 773 CDD B3_DNA 161 262 IPR003340 GO:0003677
Sebi685g00025 773 Gene3D - 331 403 - -
Sebi685g00025 773 SUPERFAMILY DNA-binding pseudobarrel domain 146 291 IPR015300 -
Sebi685g00025 773 Gene3D - 645 736 - -
Sebi685g00025 773 FunFam Auxin response factor 160 264 - -
Sebi685g00025 773 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Sebi685g00025 773 MobiDBLite consensus disorder prediction 754 773 - -
Sebi685g00025 773 FunFam Auxin response factor 331 403 - -
Sebi685g00025 773 ProSiteProfiles PB1 domain profile. 647 731 IPR000270 GO:0005515
Sebi685g00025 773 FunFam Auxin response factor 644 736 - -
Sebi685g00025 773 SMART B3_2 162 264 IPR003340 GO:0003677
Sebi685g00025 773 Gene3D - 160 263 IPR015300 -
Sebi685g00025 773 Pfam Auxin response factor 288 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi685g00025 773 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
Sebi685g00025 773 SUPERFAMILY CAD & PB1 domains 660 721 - -
Sebi685g00025 773 MobiDBLite consensus disorder prediction 585 613 - -
Sebi685g00025 773 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 62 736 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi685g00025 Sebi-Chr685 411757 425551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi685g00025 619 743 B3 DNA Binding Superfamily AT1G30330 64.000 2.68e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi685g00025 B3 1.2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi685g00025 - - gmx:100814479 1048.88