Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi685g00019 ATGCATGTTGAGGAAGTGACCCTCACTTTTCAACATAGCACTAAAATAAAGAAGTTGAAACAACAGTACGCTGATGAAGATAAAAGTGAACTTTTTCAGGAAGAAAATAGTGTGGCTAAGTGTAAATCAACATCAGAAGAAAATACTTCATTGTTGGCTGTAGATGCTTTGTCAATTATCAAAGGGTCTTCCCTCATCCAAATGTCAAAAATGGAAAATGATGGTTCCTGCAGAAAGCATGCAACTGCTGAAACACCAAAGGATAGCATTTTGACAAAAGTGGTGCTCAAGCTGGATTGCATAAGAATAAGTATAAATTCTTCAAATGCAGTAACTGCTACCAGTGAGGAAGATCTTATGAAGGAAGAAGAGCAGGATGTCATTACTTACAAAATAAGAGAAAATTCAGGAATTTCATTGGAAAAGGAAGTTTCAGAAGGGAATGTAACTGTTGGGAGGGGAAAGGTAGTCAAATCACCACATGATTTAGATAAGTCAGAATTATGTGCCATGGGTAATGAGTTTCAAATAGAAAACAAGGGAGGAGCTGTCTGGGATATTTTTAGGAGACAAGATGTGCACAAGCTCGAGGAATACCTTAGAAAGCATCGTAAGGAATTCAGGCATATCCGTTGTTCTCAAGTGGAGGAGGAGTTGAACCTTGGACTTTTTATACAAAACCTTGGTGAGGCTGTCTTTATACCTGCTGGGTGTCCCCATCAAGTTAGAAATTTACAGTCATGCATAAAGGTTGCTCTGGATTTTGTCTCTCCTGAAAATATCTCAGAGTGTGTTCGTCTAACTGAGGAGTTTCGCTCTCTTCCCCCAAACCATAGAGCAAAGGAAGATAAACTTGGGGTGAAGAAAATGTGTCTTTGGGCATTGAGCCAGGCTGCAGATGATTTAGAGAAAAGCTCAGAAGATGGGTAG 930 0.3946 MHVEEVTLTFQHSTKIKKLKQQYADEDKSELFQEENSVAKCKSTSEENTSLLAVDALSIIKGSSLIQMSKMENDGSCRKHATAETPKDSILTKVVLKLDCIRISINSSNAVTATSEEDLMKEEEQDVITYKIRENSGISLEKEVSEGNVTVGRGKVVKSPHDLDKSELCAMGNEFQIENKGGAVWDIFRRQDVHKLEEYLRKHRKEFRHIRCSQVEEELNLGLFIQNLGEAVFIPAGCPHQVRNLQSCIKVALDFVSPENISECVRLTEEFRSLPPNHRAKEDKLGVKKMCLWALSQAADDLEKSSEDG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi685g00019 309 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 218 IPR045109 GO:0032454|GO:0033169
Sebi685g00019 309 Pfam JmjC domain, hydroxylase 181 255 IPR003347 -
Sebi685g00019 309 Gene3D Cupin 94 281 - -
Sebi685g00019 309 SMART cupin_9 112 272 IPR003347 -
Sebi685g00019 309 ProSiteProfiles JmjC domain profile. 74 272 IPR003347 -
Sebi685g00019 309 SUPERFAMILY Clavaminate synthase-like 180 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi685g00019 Sebi-Chr685 244074 246175 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi685g00019 JmjC 1.4e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi685g00019 K15601 - gmx:100808936 288.115