Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi685g00006 ATGCATCAAAGAGTCACAGAGTTAAACCTAGAAGGATATCAATTGCATGGATCCATATCCCCCCATGTTGGAAATCTCTCTTTTTTGAGACACCTCAACCTTCCAAACAATAGCTTCTTTGGACAAATCCCAAAGGAAATTGGTCGGTTGTCACAATTGCAGCAACTAGATCTCACCAATAACTCATTGGCAGGAGAAATCCCCACAAACTTGACAAATTGTTCAGATCTCAAAGTCTTATACTTATTTGGGAACAATTTGATTGGAAGAATCCCAATTGAAATTGGCTCCCTTCAAAAGCTTCAAATGTTGAGAGTTGGGAAAAACAATCTAATTGGAGGAGTCCCACCATCCATAGGGAATCTTTCATCCTTAACTTGTCTCTCAGTATTTTATAATAACTTAGAAGGAGATATTCCACAAGAAGTATGCCACCTTAGAAACTTGACAAAAATATCAGTGGCTCTCAACAAACTGTCTGGTACACTTCCTTCTTGTCTTTACAACATGTCTTCTCTTACTATGTTCTCATCTACACAAAATGAATTTAATGGGTCTCTTCCACCCAACATGTTCCACAACCTCCCATATCTCCAATATTTTGGAATTGATTCCAATCAAATCTCAGGTCCAATTCCCACTTCCATTGTAAATGCTTCTACCCTTACAACACTTGATATTGGTAGAAACCATTTTTCTAAACAAGTTCCAAGTCTAGAGAAGCTACAAGAACTTCAGTTTCTACATTTGGGAGTGAACAATCTAGGTGACAATTCACCTAAGGATTTGCAATTTTTAAAATCATTGACAAATTGTAGCAAGTTGTATATGGTCGATATATCTAAAATTAATTTTGGAGGCCATTTACCACATGTCATAGGAAATTTGTCCACCAACCTCATTGAACTATATCTTGGGGGTAATCATATATTAGGAAAAATTCCTGTGGAATTGGGAAATTTAATTAGCTTAACTCTCTTGACCATGGAATATAGTGGTTTTGAAGGGAGGATTCCAGCTACTTTTGGGAAGTTTCAGAAGATGCAACAGTTAAGATTGACTGGAAACAAGCTGTCAGGAGATATACCAACCATCATAGGCAACCTTAGTCAATTGTATCATTTGAGCTTAGCACAAAATTTCTTAGAAGGAAGTATTCCTCCAAGTATAGGAAACTGCAAGATGTTACAATATCTAGACCTTTCTCAAAACAACCTTAAAGGAACCATACCCCCAGAAGTTTTTAGTCTTTCATCTTTAACAATAGGTCTGAACTTATCACAAAACTTGTTGAGTGGCAATCTACCTGATGATGTGGGTTCACTAAAAAATATTGGGAACATGGATATCTCTGAAAATCATTTGTCTGGTGAAATTCCTAAAACCATTGGAGAATGCACAAGCTTGGAGTATCTTTATTTGCAAGGGAACCTCTTCCATGGAATTATACCAACCTCTTTGGCTTCACTCAAAGGCCTTCGACATTTAGACCTATCACAAAACTGCTTGTCTGGATCAATACCTGATGTTCTACAAAATATTTATGTTTTAGAACATTTAAATGTTTCTTTTAACATGTTGGATGGTGAGGTACCAACACAAGGTGTCTTTGGAAATGCAAGCAAGTTAGGGGTGATTGGAAATAGTCAGCTTTGTGGAGGTATTTTGGAGTTACATCTACCACCATGCATTGCCAAAGGTAAAAAACTTGTAAAATTCCATAATTTCAAGTTCATAACAGTGATAGTTAGTGTGGTTGCTTTTCTTCTCATACTTCTATCTATTCTAACTGTCTATTGTATGAGGAAAAGAAACAAGACACCATCTTCTAATCTACCAACAGTTGACCGTTTCGCTAAGCTTTCATACCAAATCCTATATCATGGAACCGAAGGGTTCTCTACAAGAAACTTGATAGGATTTGGAAGTTTTGGCACTGTGTACAAAGGAATTATTGAGTCATACGACAGAGTTGTTGCCATAAAAGTCCTAAATCTTCAAAATATAGGATCTCACAAGAGTTTCTTTGCTGAATGCAATGCATTAAAAAATATCAGGCATCGAAATTTGGTTAAGATTCTATCATGTTGTTCCAGTATTGATTACAATTGTCAAGAATTTAAAGCTCTAGTTTTCGAGTACATGAAAAATGGAAGCTTAGAAAGTTGGTTACATCCGACAACAAAAATTGCAAACCAGCCTAGATCACTGGACCTTGAGGAAAGGTTGAATATTATTACTAATGTTGCTACAGCTTTTCATTATCTTCACTATGAATGTGAGCAAGTAATCATTCACTGTGATCTAAAGCCTAGCAATGTTCTTCTTGATGAGTTCATGGTGGCTTATGTCAGTGATTTTGGCTTAGCAAGATTGCTCCCAAGTATTGGATTCTCTTCAATGCAAAGTAGCACCATTGGAATAAAGGGGACTATTGGTTATGTTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCAATTGAAGGCGACATGTACAGCTTTGGAATTCTTGTACTAGAAATGTTAACTGGAAGGAGACCCACAGATGAAATGTTTAAAGATGATCATAATCTCCATAATTATGTTGAACATTCAATTTCAAATCACCTTTTGCAAATTGTGGACCCAACTATCCTCCCCAATGAATTAAAGCAGGCTGTTGACAACAAGAACCTTGGTCTTATGCATCCTAATATAGAGAAATGTTTATTTTCACTTTTTAGGATTGGACTTGCTTGTTCAGTGGAATCACCAAAAGAAAGAATGAGTATGGTTGATGTCATAAGGGAGCTTAACCTAATCAAAAGTTTCTTTCCTTTATGGGTTTAG 2829 0.3641 MHQRVTELNLEGYQLHGSISPHVGNLSFLRHLNLPNNSFFGQIPKEIGRLSQLQQLDLTNNSLAGEIPTNLTNCSDLKVLYLFGNNLIGRIPIEIGSLQKLQMLRVGKNNLIGGVPPSIGNLSSLTCLSVFYNNLEGDIPQEVCHLRNLTKISVALNKLSGTLPSCLYNMSSLTMFSSTQNEFNGSLPPNMFHNLPYLQYFGIDSNQISGPIPTSIVNASTLTTLDIGRNHFSKQVPSLEKLQELQFLHLGVNNLGDNSPKDLQFLKSLTNCSKLYMVDISKINFGGHLPHVIGNLSTNLIELYLGGNHILGKIPVELGNLISLTLLTMEYSGFEGRIPATFGKFQKMQQLRLTGNKLSGDIPTIIGNLSQLYHLSLAQNFLEGSIPPSIGNCKMLQYLDLSQNNLKGTIPPEVFSLSSLTIGLNLSQNLLSGNLPDDVGSLKNIGNMDISENHLSGEIPKTIGECTSLEYLYLQGNLFHGIIPTSLASLKGLRHLDLSQNCLSGSIPDVLQNIYVLEHLNVSFNMLDGEVPTQGVFGNASKLGVIGNSQLCGGILELHLPPCIAKGKKLVKFHNFKFITVIVSVVAFLLILLSILTVYCMRKRNKTPSSNLPTVDRFAKLSYQILYHGTEGFSTRNLIGFGSFGTVYKGIIESYDRVVAIKVLNLQNIGSHKSFFAECNALKNIRHRNLVKILSCCSSIDYNCQEFKALVFEYMKNGSLESWLHPTTKIANQPRSLDLEERLNIITNVATAFHYLHYECEQVIIHCDLKPSNVLLDEFMVAYVSDFGLARLLPSIGFSSMQSSTIGIKGTIGYVPPEYGMGSEVSIEGDMYSFGILVLEMLTGRRPTDEMFKDDHNLHNYVEHSISNHLLQIVDPTILPNELKQAVDNKNLGLMHPNIEKCLFSLFRIGLACSVESPKERMSMVDVIRELNLIKSFFPLWV 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi685g00006 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672|GO:0006468
Sebi685g00006 942 SUPERFAMILY L domain-like 298 553 - -
Sebi685g00006 942 ProSitePatterns Protein kinases ATP-binding region signature. 639 662 IPR017441 GO:0005524
Sebi685g00006 942 Gene3D Ribonuclease Inhibitor 265 570 IPR032675 -
Sebi685g00006 942 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 715 939 - -
Sebi685g00006 942 FunFam LRR receptor-like serine/threonine-protein kinase EFR 603 714 - -
Sebi685g00006 942 Gene3D Transferase(Phosphotransferase) domain 1 715 937 - -
Sebi685g00006 942 SMART serkin_6 633 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi685g00006 942 Gene3D Phosphorylase Kinase; domain 1 614 714 - -
Sebi685g00006 942 Gene3D Ribonuclease Inhibitor 1 264 IPR032675 -
Sebi685g00006 942 Pfam Leucine rich repeat 348 406 IPR001611 GO:0005515
Sebi685g00006 942 Pfam Leucine rich repeat 468 527 IPR001611 GO:0005515
Sebi685g00006 942 SUPERFAMILY Protein kinase-like (PK-like) 607 932 IPR011009 -
Sebi685g00006 942 Pfam Protein kinase domain 635 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi685g00006 942 FunFam LRR receptor-like serine/threonine-protein kinase EFR 261 569 - -
Sebi685g00006 942 ProSiteProfiles Protein kinase domain profile. 633 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi685g00006 942 SMART LRR_typ_2 369 393 IPR003591 -
Sebi685g00006 942 SMART LRR_typ_2 50 74 IPR003591 -
Sebi685g00006 942 SMART LRR_typ_2 122 146 IPR003591 -
Sebi685g00006 942 SMART LRR_typ_2 490 513 IPR003591 -
Sebi685g00006 942 SMART LRR_typ_2 394 417 IPR003591 -
Sebi685g00006 942 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 199 - -
Sebi685g00006 942 SUPERFAMILY RNI-like 7 295 - -
Sebi685g00006 942 PANTHER OS04G0122200 PROTEIN 145 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi685g00006 Sebi-Chr685 89811 92791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi685g00006 2 938 Receptor kinase-like Gene Family AT3G47570 44.889 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi685g00006 Pkinase 7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi685g00006 - - gmx:100792724 1290.4