Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi684g00010 ATGCATGTTCAGAAGCAGACCCGTGCCGGTCAGCGAACTCGGTTCAAGGCCTTCGTTGTCGTTGGTGACGGCAATGACCACGTTGGTCTTGATGTCAAGTGCAGCAAGGAAGTTTCCACCGCCATTTGCGGTGCCATCATCTTGGCTAAGCTCTCCGTCATTCCCGTGAGAAGAGGTTACTGGGGTAACAAGATTGGAAAGCCCCATATTGTTCCCTACAAGGTCACTGGAAAGTGTGGTTCAACCATTATCCGCATGGTCCCCGCCCCTCGTGGTTCTGGAATTGTTGCTGCTAGGGTTCCTAAGAAGGTCTTGCAATTTGCAGGAATTGAGGATGTCTTCACCTCCTCCAGAGGATCCACTAAGACTCTTGGAAATTTCGTAAAGGTTCCTAACGCCCGACTTCTGGAGGGAGACTCGTTTTCTCCAAATCTCCATTCCAAGAGTACACTGATCTATTGGCTAAGCCGACAGGAAAGGCCCTGA 486 0.5062 MHVQKQTRAGQRTRFKAFVVVGDGNDHVGLDVKCSKEVSTAICGAIILAKLSVIPVRRGYWGNKIGKPHIVPYKVTGKCGSTIIRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKVPNARLLEGDSFSPNLHSKSTLIYWLSRQERP 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi684g00010 161 ProSiteProfiles S5 double stranded RNA-binding domain profile. 1 56 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sebi684g00010 161 SUPERFAMILY Ribosomal protein S5 domain 2-like 71 130 IPR020568 -
Sebi684g00010 161 Gene3D - 56 145 IPR014721 -
Sebi684g00010 161 NCBIfam 30S ribosomal protein S5 2 131 IPR005711 GO:0003735|GO:0006412|GO:0015935
Sebi684g00010 161 Gene3D - 1 55 - -
Sebi684g00010 161 SUPERFAMILY dsRNA-binding domain-like 1 58 - -
Sebi684g00010 161 PANTHER RIBOSOMAL S SUBUNIT 2 128 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sebi684g00010 161 FunFam 40S ribosomal protein S2 1 55 - -
Sebi684g00010 161 Pfam Ribosomal protein S5, C-terminal domain 77 129 IPR005324 GO:0003735|GO:0005840|GO:0006412
Sebi684g00010 161 FunFam 40S ribosomal protein S2 56 147 - -
Sebi684g00010 161 Pfam Ribosomal protein S5, N-terminal domain 1 57 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi684g00010 Sebi-Chr684 276315 277322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi684g00010 1 129 Cytoplasmic Ribosomal Protein Gene Family AT1G58983 90.698 1.66e-79 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi684g00010 K02981 - thj:104824448 236.498