Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi684g00009 | ATGGAGGAAGCTGACCAGTACGAATCCGTTGGGCTGGATGACTCGTTGGAGGATGATAGGGATTTTGATCAGATCATGGAAGATCGAAGGGCTGCAGAGGTGGAGCTCGACAACCGTGATGGTCGCGTTTCCAATCGCAACAAACTTCCTCAGCTTCTGCACGACCAGGATACAGATGATGACAGTTATAGGCCTTCTAAAAGGGCTCGACCTGATTTCAGGCCTCCAATTCCAAGCGATGACGATCTTGATGGGATGCAAAGTTCACCTGGAAGGTCACAACGAGGACACTCAAGAGAAGATGTTCCAATGACTGATCAAACTGAGGATGATCGATATGAGGATGAATATGATGATGAAGGTGAGTACCAGATGTACCATGTTCAAGGTACACTCAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCCGGAAATTCAAGGATTTCTTGCTCACATATGTCAATCCGAAAAATGAACATGGTCAATTTGAATATGTCCGCCTGATAAATGAGATGTTCTACAAGTGTAGTTTGGAGATTGATTACAAACAATTTTTCTATCTACATCACAACATTGCCTTATGGCTGGCTGATGCACCTCAGTCTGTTTTAGAAGTAATGGAAGATGTTGCCAAAAGCGTTGTCTTTCAACTCCATCCAAATTACAAAAATATACATCAAAAGATTTATGTTCGCATAACAAACTTACCAGTATATGATCAGATTCGAAATATTAGGCAGATCCACTTAAATACAATGATCCGAATTGGGGGAGTAGTAACCAGGTGCTCTGGAGTTTTCCCCCAATTGCAACAGGTGAAGTATGACTGTAACAAATGTGGGGCCATTTTGAGACCTTTTTCACAGAATTCCTATTCAGAGGTTAAAGTTGGATCCTGTCCCGAGTGTCAATCAAAAGGACCATTCACTGTCAATATTGAGCAGACAATTTACCGGAATTTTCAAAAGCTTACTCTCCAAGAGAGCCCAGGGACAGTTCCTGCTGGTCGACTTCCAAGATACAAGGAAGTGATACTACTGAATGATCTGATTGACTGTGCTCGACCCAGGGAAGAGATTGAGGTCACAGGTATTTATACTAATGACTTTGACTTATCCTTAAACATAAAGAATGGATTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATCATGTTACGAAGAAGCAAGATCTGTTCTCTTCCTACAAACTTACACAGGAAGACAAAGAAGAGATTGAAAATTTGGGCAAAGACCCCCGAATCGGAGAAAGGATTGTAAAGTCTATTGCTCCATCAATATATGGTCATGAGGACATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGAAAGCATCGACTGCGAGGAGACATAAATGTTCTTCTTCTCGGTGATCCAGGAACAGCAAAGTCTCAATTTCTCAAGTATGTTGAAAAAACTGGGCAGAGAGCTGTATACACTACTGGCAAAGGGGCTTCTGCTGTGGGTCTCACAGCTGCAGTTCACAAGGATCCAGTCACTAGGGAGTGGACCCTTGAGGGGGGAGCCCTTGTTCTAGCTGACAAAGGAATTTGTCTCATTGATGAGTTTGACAAGATGAATGATCAGGATAGGGTAAGTATCCATGAAGCCATGGAGCAGCAGAGCATAAGCATATCAAAAGCGGGAATTGTCACATCTCTTCAGGCACGCTGTTCTGTCATTGCTGCTGCACATCCTATCGGAGGAAGATATGATTCCTCAAAAACATTTTCCTCAAATGTTGAATTGACAGATCCTATTATATCTCGTTTTGACATCCTCTGTGTTGTGAAGGATGTGGTTGATCCGGTTACTGATGAAATGCTTACAAAGTTTGTAGTTGACAGTCACTTCAAGTCACAACCTAAGGGGGCTATTAAAGATGATAAGTCCTTGAGTGAGTCCCAAGATGTTTATGCAGCTGCCATGCCAGCTGATCCCGAGATACTTCCTCAAGACCTACTGAAGAAGTACATTACATATGCGAAGTTGAATATTTTTCCAAGGTTGCATGATGCTGATTTGGATAAACTGACACATGTATATGCTGAACTGCGGAGGGAATCTTCACACGGGCAAGGAGTCCCCATTGCCGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCTAGAATGCATCTCAGACAGCATGTCACACAAGAGGATGTGGACATGGCAATTCGTGTTCTACTCGATTCATTCATTTCAACTCAAAAAGCTTTAGAGTATATGACTTTCAAGAAGGACTATAATGAATTGCTTCTTTATCTTCTCCGCGAGCTTGTAAAGAATGCTTTGCATTTCGAAGAAATTGTCACCGGATCTGCTTCAGGTCTTACGCATGTAGATGTCAAAATAGATGATCTCTACAACAAGGCTAAAGAGCATGAAATATATGATTTGAAACCCTTCTTCAGTAGCAGCCACTTTTCTAGGGCCAATTTTGTATTAGATGAAGAACGAGGAGTGATCAGACATCACCTTGCTACATGA | 2553 | 0.4207 | MEEADQYESVGLDDSLEDDRDFDQIMEDRRAAEVELDNRDGRVSNRNKLPQLLHDQDTDDDSYRPSKRARPDFRPPIPSDDDLDGMQSSPGRSQRGHSREDVPMTDQTEDDRYEDEYDDEGEYQMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHGQFEYVRLINEMFYKCSLEIDYKQFFYLHHNIALWLADAPQSVLEVMEDVAKSVVFQLHPNYKNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRCSGVFPQLQQVKYDCNKCGAILRPFSQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGTVPAGRLPRYKEVILLNDLIDCARPREEIEVTGIYTNDFDLSLNIKNGFPVFATVVEANHVTKKQDLFSSYKLTQEDKEEIENLGKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAAHPIGGRYDSSKTFSSNVELTDPIISRFDILCVVKDVVDPVTDEMLTKFVVDSHFKSQPKGAIKDDKSLSESQDVYAAAMPADPEILPQDLLKKYITYAKLNIFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKALEYMTFKKDYNELLLYLLRELVKNALHFEEIVTGSASGLTHVDVKIDDLYNKAKEHEIYDLKPFFSSSHFSRANFVLDEERGVIRHHLAT | 850 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi684g00009 | 850 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 434 | 755 | IPR027417 | - | |
| Sebi684g00009 | 850 | SMART | mcm | 241 | 755 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi684g00009 | 850 | MobiDBLite | consensus disorder prediction | 22 | 44 | - | - | |
| Sebi684g00009 | 850 | Gene3D | - | 404 | 776 | IPR027417 | - | |
| Sebi684g00009 | 850 | Pfam | MCM P-loop domain | 412 | 634 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi684g00009 | 850 | Gene3D | - | 272 | 322 | - | - | |
| Sebi684g00009 | 850 | FunFam | DNA helicase | 404 | 777 | - | - | |
| Sebi684g00009 | 850 | ProSiteProfiles | MCM family domain profile. | 424 | 630 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi684g00009 | 850 | SUPERFAMILY | Nucleic acid-binding proteins | 148 | 393 | IPR012340 | - | |
| Sebi684g00009 | 850 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 132 | 759 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi684g00009 | 850 | MobiDBLite | consensus disorder prediction | 1 | 120 | - | - | |
| Sebi684g00009 | 850 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Sebi684g00009 | 850 | FunFam | DNA helicase | 272 | 322 | - | - | |
| Sebi684g00009 | 850 | MobiDBLite | consensus disorder prediction | 52 | 79 | - | - | |
| Sebi684g00009 | 850 | Pfam | MCM AAA-lid domain | 670 | 754 | IPR041562 | - | |
| Sebi684g00009 | 850 | Pfam | MCM N-terminal domain | 147 | 238 | IPR027925 | - | |
| Sebi684g00009 | 850 | ProSitePatterns | MCM family signature. | 533 | 541 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Sebi684g00009 | 850 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 577 | 589 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi684g00009 | 850 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 604 | 612 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi684g00009 | 850 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 525 | 539 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi684g00009 | 850 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 553 | 566 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi684g00009 | 850 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 465 | 480 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Sebi684g00009 | 850 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 312 | 326 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Sebi684g00009 | 850 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 388 | 399 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Sebi684g00009 | 850 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 254 | 271 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Sebi684g00009 | 850 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 277 | 289 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Sebi684g00009 | 850 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 373 | 384 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Sebi684g00009 | 850 | Gene3D | - | 139 | 241 | - | - | |
| Sebi684g00009 | 850 | Gene3D | - | 245 | 370 | IPR012340 | - | |
| Sebi684g00009 | 850 | FunFam | DNA helicase | 139 | 241 | - | - | |
| Sebi684g00009 | 850 | Pfam | MCM OB domain | 244 | 370 | IPR033762 | - | |
| Sebi684g00009 | 850 | CDD | MCM2 | 427 | 753 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi684g00009 | Sebi-Chr684 | 254816 | 259463 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi684g00009 | 1 | 845 | Core DNA Replication Machinery Family | AT1G44900 | 76.135 | 0.0 | 1283 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi684g00009 | K02540 | - | gmx:100799441 | 1484.93 |