Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi683g00020 ATGTATGCTTGGTTGCTGTGCTTTACTCACCCGTGTTTAGCAGGAGATACTCTGAACGCCAGCCTGAATATAACAGGTAATGGATTCCTTGTTTCAGCTGGGAAAAAATTTGAACTAGGCTTCTTTTCTCCTCTTAACGTTACTGGCGGTAAAGGAAGGTACTTAGGGATGTGGTATCACAGGCAAGAGGACTCAGAAGATCTAACAGTGGTTTGGGTTGCCAACAGAGACAACCCTGTAGCTGTTGATTCCACTGGAGTTTTCCAAATAGCAGAGGATGGGAATCTGATGGAATCAAAGTGTGGGAGAGCTTTTGAACACCCAATTGACACATTCCTACCTGGCATGAACATGGATAGGAATTTGAAGTTAACCAGTTGGAGAAACCTCACAGACCCAGGAAGTGGGAACTTCACTTTTAAGATGGAAGACAACCGTTTCATCATCTTAAACCATGACCAACTTTATTGGGAGAGTGAAGAACAAGGGATACTGAATTCAAAAACAGAGTCTGATGATGACATGAGCACTGAAGTTTACATCTTGTTGACCAACTTCACCGTACTGGACCTAAATTCCACCAAATACGAGAACACGAGGCTGCTCCTCAATTATACAGGGATGATCCAATTTCTGCTGAGGGGTAATTTCCAAAGCTTTGTTGGGTGGTTTCAGCCAAAAACCTATTGCTTAACTTATAATGCTTGCGGGAACTTCACCAGCTGCAATGACAATGTCAATGATAACTATAACGTATGCAAATGTTTGCCTGGATTCAATGATGAAAATAATGACATGGGAAAGGGACGTTCTTCTCCTCTACTATGTACCAGAAAATCAGCAGCAGCATGTGGAAAGGACACCACCAAGGTAGACGAATCAGACATAGCACCAACTCCTAGAACTTGTAAGCCTTGCGGCACAAACACAGTCCCTTATCCGCTGAGCACAGGACTCAGTTGTGGAGACCCTGCGTACTTCAAGTTCAGCTGTAACATCTCAACAGGTCAGCTTAGCTTCCACGACACCAACAACAACAGTTACGAACGAAAAATAGCTCTAAAGTTTAAGCAAGATGCAAACAAGCTTGGAAAAGGGGGTTATGGACCAGTTTACAAGGGTAAGCTTGAAGGAGGTCAAGATATTGCGGTGAAGAGGCTTTCAAGTGTTCATCACAAGGCTTACAGGAATTCAAGAATGAGATGGGGAGATGCAACCAAAATTTCAGATTTTGGATTGGCAAGAATATTTGGAGGCAAAGAGACTGAGGCAAGCACCGAGAGGGTTGTAGGGACATATGGATACATGTCTCCTGAGTATGCATTGGATGGACATTTCTCAACCAAATCGGATGTTTTCAGTTTTGGTGTCATGGCCTGGGGACTTTGGACAGAGAACAAGTTGGTGGATTTAGTAGACTTGTCTCTACGTGAAACTTACAATGCAAACCAATTTATTAAGTGTGCACATATTGGGCTCTTATGTGTACAAGATGAACCAAATGATAGACCAAACATGTCAAATGTTGTGACAATGCTTGATAGTGAAACTGCAACCCTGCCAACCCCTAAACAACCAACTTTTTTTACGCGTAAAGACCTATCTAGCACGGCTTCTTCAAGTCTGCAGTTTGAGAGTAACATTCAAGAAGGTCGATAA 1659 0.428 MYAWLLCFTHPCLAGDTLNASLNITGNGFLVSAGKKFELGFFSPLNVTGGKGRYLGMWYHRQEDSEDLTVVWVANRDNPVAVDSTGVFQIAEDGNLMESKCGRAFEHPIDTFLPGMNMDRNLKLTSWRNLTDPGSGNFTFKMEDNRFIILNHDQLYWESEEQGILNSKTESDDDMSTEVYILLTNFTVLDLNSTKYENTRLLLNYTGMIQFLLRGNFQSFVGWFQPKTYCLTYNACGNFTSCNDNVNDNYNVCKCLPGFNDENNDMGKGRSSPLLCTRKSAAACGKDTTKVDESDIAPTPRTCKPCGTNTVPYPLSTGLSCGDPAYFKFSCNISTGQLSFHDTNNNSYERKIALKFKQDANKLGKGGYGPVYKGKLEGGQDIAVKRLSSVHHKAYRNSRMRWGDATKISDFGLARIFGGKETEASTERVVGTYGYMSPEYALDGHFSTKSDVFSFGVMAWGLWTENKLVDLVDLSLRETYNANQFIKCAHIGLLCVQDEPNDRPNMSNVVTMLDSETATLPTPKQPTFFTRKDLSSTASSSLQFESNIQEGR 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi683g00020 552 Pfam S-locus glycoprotein domain 194 262 IPR000858 GO:0048544
Sebi683g00020 552 ProSiteProfiles Protein kinase domain profile. 127 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi683g00020 552 Pfam Protein tyrosine and serine/threonine kinase 403 513 IPR001245 GO:0004672|GO:0006468
Sebi683g00020 552 Gene3D Transferase(Phosphotransferase) domain 1 399 525 - -
Sebi683g00020 552 Gene3D - 11 162 IPR036426 -
Sebi683g00020 552 SMART blect_4 21 163 IPR001480 -
Sebi683g00020 552 Gene3D Phosphorylase Kinase; domain 1 337 398 - -
Sebi683g00020 552 SUPERFAMILY alpha-D-mannose-specific plant lectins 54 160 IPR036426 -
Sebi683g00020 552 SUPERFAMILY Protein kinase-like (PK-like) 358 538 IPR011009 -
Sebi683g00020 552 ProSiteProfiles Bulb-type lectin domain profile. 15 163 IPR001480 -
Sebi683g00020 552 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 290 - -
Sebi683g00020 552 ProSiteProfiles EGF-like domain profile. 226 265 IPR000742 -
Sebi683g00020 552 MobiDBLite consensus disorder prediction 533 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi683g00020 Sebi-Chr683 223965 227742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi683g00020 361 531 Receptor kinase-like Gene Family AT4G23280 38.397 5.55e-42 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi683g00020 PK_Tyr_Ser-Thr 1.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi683g00020 - - tpra:123882048 237.269