Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi683g00009 ATGGCTCCTGCCACCTCGTCTGCGGCGTCGCACAAGCTCGTTGGCTTCAGTTGTCGCACGCATGCGCCGCGCCATCCACAGCGGCCCTATGCGCCGCCGATTAAGAAGAACAGGTCGATGAAGGACATAATGGAGAGGGCACGCTATGTCGTGGTGGAACGTGAGGATTATAGCGACCTGACCTGCGACCAATGTCGATCCGATGAGAGGGCGGAGGAGCAGCTTTTGTGCGACAAATGTGACAAAGGCTTCCACATGAAATGTGTGAGGCCCATTGTCGTCAGGGTACCGAATGGATCTTGGCTTTGCCCTAAGTGTTCGGGAGGGAAGAGAGTGAGAAGCAAGGGATTGTCGAAATGTGGTTTCTCTCAGAATAAGACAACTGATTTCTTTGGGATTGACAAGGATTCTTCTGACTTTAAGAACAAAGGTTCTTCTTCTCAGGAACACACCGAGTGTGGATATTTGTCTCCCCCTTTTGAATCGAGCTTCAATCAATGTTTGGCTTTGTGA 513 0.5088 MAPATSSAASHKLVGFSCRTHAPRHPQRPYAPPIKKNRSMKDIMERARYVVVEREDYSDLTCDQCRSDERAEEQLLCDKCDKGFHMKCVRPIVVRVPNGSWLCPKCSGGKRVRSKGLSKCGFSQNKTTDFFGIDKDSSDFKNKGSSSQEHTECGYLSPPFESSFNQCLAL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi683g00009 170 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Sebi683g00009 170 SMART PHD_3 61 107 IPR001965 -
Sebi683g00009 170 Pfam PHD-finger 62 107 IPR019787 -
Sebi683g00009 170 SUPERFAMILY FYVE/PHD zinc finger 26 107 IPR011011 -
Sebi683g00009 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 127 IPR013083 -
Sebi683g00009 170 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Sebi683g00009 170 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 61 115 IPR047171 GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi683g00009 Sebi-Chr683 131190 131912 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi683g00009 59 147 C2H2 Transcription Factor Family AT3G01460 31.959 2.10e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi683g00009 PHD 7.4e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi683g00009 K24406 - qsa:O6P43_023354 177.563