Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi683g00006 ATGGAGAGGGTGCGCTATGTCGTGGTGGAACGTGAGGATTATAGCGACCTAACCTGTGACCAATGTCGATCCGATGAGAGGACGGAGGAGCTGCTTTTGTGCGACAAATGCGACAAAGGCTTCCACATGAAATGTGCAAGGCCCATAGTCGTGAGGGTACCGAATGGATCTTGGCTTTGCCCTAAGTGTTCGGGAGGGAAGAGAGTGAGAAGTTTCTCTCAGAAGAAGACAGGTGATTTCTTTGGGATTGACAAGGACTCTTCTGACATTAAGAACAAAGGTTCTTCTTCTCAGGCTTCATATACCGTTGCTTCACCAAATCATATGAGAAAAATAAATACACCTGAGCTTGTCTCGTGA 360 0.4667 MERVRYVVVEREDYSDLTCDQCRSDERTEELLLCDKCDKGFHMKCARPIVVRVPNGSWLCPKCSGGKRVRSFSQKKTGDFFGIDKDSSDIKNKGSSSQASYTVASPNHMRKINTPELVS 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi683g00006 119 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 19 79 IPR047171 GO:0006338
Sebi683g00006 119 SUPERFAMILY FYVE/PHD zinc finger 9 68 IPR011011 -
Sebi683g00006 119 ProSiteProfiles Zinc finger PHD-type profile. 16 66 IPR019787 -
Sebi683g00006 119 MobiDBLite consensus disorder prediction 92 109 - -
Sebi683g00006 119 Pfam PHD-finger 19 64 IPR019787 -
Sebi683g00006 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 79 IPR013083 -
Sebi683g00006 119 ProSitePatterns Zinc finger PHD-type signature. 19 63 IPR019786 -
Sebi683g00006 119 MobiDBLite consensus disorder prediction 85 119 - -
Sebi683g00006 119 SMART PHD_3 18 64 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi683g00006 Sebi-Chr683 99532 100220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi683g00006 16 70 C2H2 Transcription Factor Family AT3G01460 37.500 5.91e-09 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi683g00006 PHD 1.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi683g00006 K24406 - gmx:100808815 147.517