Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi683g00004 ATGGCTCCTGCCACCTCGTCTGCGGCGCCGCACAAGCTCGTTGGCTTCATTCGTCGCACGCATGCGCCGCGCCATCCACAACGGTCGTATGCGCCGCCGATTAAGAAGTACAGGTCGATGAAGGACATAATGGAGAGGCCGCGCTATGTCCTGGTGGAACGTGACGATTATAGAGACCTGACCTGCGACCAATGTCGATCCGATGAGAGGGCGAAGGAGCTGCTTTTGTGCGACAAATGCGACAAAGGCTTCCACATGAAATGTGTGAGGCCCATCGTCGTGAGGGTACCGAATGGATCTTGA 303 0.5644 MAPATSSAAPHKLVGFIRRTHAPRHPQRSYAPPIKKYRSMKDIMERPRYVLVERDDYRDLTCDQCRSDERAKELLLCDKCDKGFHMKCVRPIVVRVPNGS 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi683g00004 100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 100 IPR013083 -
Sebi683g00004 100 Pfam PHD-finger 62 92 IPR019787 -
Sebi683g00004 100 SUPERFAMILY FYVE/PHD zinc finger 26 99 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi683g00004 Sebi-Chr683 77953 78255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi683g00004 62 100 C2H2 Transcription Factor Family AT3G01460 38.462 3.67e-06 42.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi683g00004 PHD 3.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi683g00004 K24406 - qsa:O6P43_023354 134.806