Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi683g00003 ATGGCTCCTGCCACCTCGTCTGCGGCGTCGCAAGAGCTCGTTGGCTTCAGTCGTCGCACACATGCGCCGCGCAATCCACAGCGGCCCTTTGCGCCGCCGATTAAGAAGTACAGGTCGATGAAGGACATAATGGAGAGGGCGCACTATGTCGTGGTAGAACATGAGGATTATAGTGACCTGACCTGCGACCAATGTCGATCCGATGAGAGGGCGGAGGAGTTGCTTTTGTGCGACAAATGCGACAAAGGCTTCCACATGAAATGTGTGAGGCCCATCGTCGTGAGGGTACCGAATGGATCTTGGCTTTGCCCTAAGTGTTCGGGAGGGAAGAGAGTGAGAAGTAAGGGATTGTCGAAACGTGGTTTCACTCAGAAGAAGACAACTGATTTCTTTGGGATTGACAAGGATTCTTCTGACTTTAAGAACAAAGGTTCTTCTTCTCAGGGTAATGTGCTGAAATTCAGACATATTTATATATAA 480 0.4958 MAPATSSAASQELVGFSRRTHAPRNPQRPFAPPIKKYRSMKDIMERAHYVVVEHEDYSDLTCDQCRSDERAEELLLCDKCDKGFHMKCVRPIVVRVPNGSWLCPKCSGGKRVRSKGLSKRGFTQKKTTDFFGIDKDSSDFKNKGSSSQGNVLKFRHIYI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi683g00003 159 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Sebi683g00003 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 119 IPR013083 -
Sebi683g00003 159 MobiDBLite consensus disorder prediction 1 33 - -
Sebi683g00003 159 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 60 108 - -
Sebi683g00003 159 SMART PHD_3 61 107 IPR001965 -
Sebi683g00003 159 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Sebi683g00003 159 Pfam PHD-finger 62 107 IPR019787 -
Sebi683g00003 159 SUPERFAMILY FYVE/PHD zinc finger 50 111 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi683g00003 Sebi-Chr683 71823 72393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi683g00003 33 158 C2H2 Transcription Factor Family AT3G01460 28.467 4.34e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi683g00003 PHD 7.3e-12 CL0390