Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi683g00002 ATGGCTCCTACCACCTCATCTGCGGCGTCGCACAGGCTCGTTGGCTTCAGTCATCGCACACATGCGTCGCGCCATCCAAAGAAGCTGTATGTGCCGCCGATTAAGAAATACAGGTCGATGAAAAACATAATGGAAAGGGCGCGCTATGTCGTGGTGGAACGTGAGGATTATAGCGACCTGACCTGCGACCAATGTCGATCTGATGAAAAGGCGGAGGAGCTGCTTTTGTGCGACAAATGCAACAAAGGCTTCCACATGAAATGTGTGAGGCCCATCGTCGTGAGGGTCCCGAATGGATCTTGGCTTTGCCCTAAGTGTTCGGGAGGGAAGAGAGTGAGAAGTTTCTCTCAGAAGAAGACAACTGAGTTCTTTGGGATTGACAAGGATTCTTCTGACTTTAAGAAAAAAGGTTCTTCTTCTCAGGAACTCACCGAGTGTGGATATTTGTCTCCCCCTTTTGAATTGAGCTTCAATCAATGTTTGGCTTTGTGA 492 0.4858 MAPTTSSAASHRLVGFSHRTHASRHPKKLYVPPIKKYRSMKNIMERARYVVVEREDYSDLTCDQCRSDEKAEELLLCDKCNKGFHMKCVRPIVVRVPNGSWLCPKCSGGKRVRSFSQKKTTEFFGIDKDSSDFKKKGSSSQELTECGYLSPPFELSFNQCLAL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi683g00002 163 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Sebi683g00002 163 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 61 136 IPR047171 GO:0006338
Sebi683g00002 163 SMART PHD_3 61 107 IPR001965 -
Sebi683g00002 163 Pfam PHD-finger 62 107 IPR019787 -
Sebi683g00002 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 122 IPR013083 -
Sebi683g00002 163 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Sebi683g00002 163 SUPERFAMILY FYVE/PHD zinc finger 51 111 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi683g00002 Sebi-Chr683 36362 37090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi683g00002 59 113 C2H2 Transcription Factor Family AT3G01460 39.286 3.38e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi683g00002 PHD 6e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi683g00002 K24406 - gmx:100808815 172.555