Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi683g00001 ATGGCTCATGCCACCTCATCTGCGGCGTCGCACAAGCTCGTTGGCTTCAGTCGTCGTACGCATGCGCCGCGCCATCCACAACGGCCGTATGCTCCCCCGATTAAGAAATACAGGTCGATGAAGGACATAATGGAGAGGGCGCGCGATGTCGTGGTGGAACGTGAGGATTATAGCGACCTGACCTGCGACCAATGTCGATTCGATGAGAGAGCGGAGAAGCTGCTTTTGTGCGACAAATGCGACAAAGGCTTCCACATGAAATATGTGAGGCCCATCGTCGTGAGGGTACCGAATGGATCTTGGCTTTGCCCTAAGTGTTCGGGAGGAAGAGAGTGA 336 0.5476 MAHATSSAASHKLVGFSRRTHAPRHPQRPYAPPIKKYRSMKDIMERARDVVVEREDYSDLTCDQCRFDERAEKLLLCDKCDKGFHMKYVRPIVVRVPNGSWLCPKCSGGRE 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi683g00001 111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 111 IPR013083 -
Sebi683g00001 111 SMART PHD_3 61 107 IPR001965 -
Sebi683g00001 111 SUPERFAMILY FYVE/PHD zinc finger 51 108 IPR011011 -
Sebi683g00001 111 MobiDBLite consensus disorder prediction 1 33 - -
Sebi683g00001 111 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 60 106 - -
Sebi683g00001 111 Pfam PHD-finger 62 107 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi683g00001 Sebi-Chr683 9930 10265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi683g00001 33 111 C2H2 Transcription Factor Family AT3G01460 33.750 6.76e-08 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi683g00001 PHD 2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi683g00001 K24406 - qsa:O6P43_023354 148.673