Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi681g00007 ATGTGTGGCGCATGCGGGGAGAACTATGCATCTGATGAGTTTTGGATTTGTTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCTAGGGCTGAGCACATTAAGCAGTACAAGTGTCCGTCTTGCAACAATAAGAGAGCACGACCTTGA 168 0.4702 MCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCNNKRARP 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi681g00007 55 SMART PHD_3 1 49 IPR001965 -
Sebi681g00007 55 Pfam PHD-finger 1 51 IPR019787 -
Sebi681g00007 55 ProSiteProfiles Zinc finger PHD-type profile. 1 51 IPR019787 -
Sebi681g00007 55 ProSitePatterns Zinc finger PHD-type signature. 2 48 IPR019786 -
Sebi681g00007 55 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 54 IPR013083 -
Sebi681g00007 55 PANTHER CPG BINDING PROTEIN 1 54 IPR045104 GO:0006355|GO:0042393
Sebi681g00007 55 FunFam PHD finger alfin-like protein 1 50 - -
Sebi681g00007 55 SUPERFAMILY FYVE/PHD zinc finger 2 52 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi681g00007 Sebi-Chr681 271107 271274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi681g00007 2 54 Alfin-like Transcription Factor Family AT5G26210 90.566 3.45e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Sebi681g00007 PHD 6.5e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi681g00007 K26274 - twl:119996557 129.798