Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi681g00005 ATGCTTCCTGCATTTCCTGCTAACCGTTTTGATCTTCCGTTGACTGACACACTACACGCTTTCCACTTCCACTCCTCCTCGTATAGATCTGGAGAGGGGGAAGTGTTCTGGATTGATCTGTTTGGGAGAGTGAAGGGAAGCAAAGCTGGCGACCACAGTGACTTGGAGCATCTAAAAGGTGAGCCTTGGTGCAACGTGTTGGAGTTGCTGCCATGCGACTATGAGGAAAGAAATGGTGATGGGAAGGTTCAAGATTCAGAGCCTCCAACTCCCCATTCTGTTCTGAAGATGGGATTGAGGGAACGTACCAGCAGCAGCATGGAAGATCCAGATGGGACATTAGCAAGTGTTGCTCAATGCATTGAGCAGCTACGTCAGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCCTTGAAACAGTTATTGGACCTTATTGATATGCGTGAAAATGCTTTCAGTGCTGTTGGATCTCACTCTCAAGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGCTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCTCTCCTTGGTCTACTCAAGTCTAGTTCTGCTGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTGCTGTCTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATATTTTCAACTGAAGGAGTTGTTCCGGTTCTCTGGGAGCAGCTGCAAAAGGGCCTGAAGAATGGAAGTGTAGTCGATAGTTTATTGACTGGAGCATTGAAAAATCTCTCCAGCAGTACTGAGAGATTCTGGAATGCCACAATACAAGCTGGAGGAGTCGACATATTAGTGAAGTTGCTGACAACAGGGCAGTCTAGCACCTTAGCTAATGTGTGCTTTTTACTTGCCTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGGTATTGACAGCAGAGGCAACAAAACAACTTCTCAAACTTTTAGGCCCTGGTAATGATGCCCCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTGCCCAATGCAAAGATGCAAGGAAAGAGATAGCCAATTCTAATGGCATTCCTGCTCTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAATCATGTTCCTCGCCTACCCAAATCGCCGACACATTGGGGGCTTTAGCTTCCGCTCTTATGATATATGATGACAAGGCAGAATCTACTAGAGCATCAGATCCTTTGGTAGTTGAGCAGACACTACTCAAGCAATTTAAACCTCACTTGCCCTTCCTTGTGCAGGAAAGGACCATTGAAGCCCTAGCTAGTTTGTATGGCAATCCTATACTGTCACTTAAACTTGCAAATTCTGATGCAAAGCGGTTGCTTGTTGGTTTAATAACAATGGCTGCTAATGAAGTGCAAGATGAGCTTCTAAAAGCTCTCTTGACACTATGCAATAGTGAATGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTAGGGCTTTCATCAGAACAACAGCAAGAATGTGCTGTTGCCCTACTTTGTCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCAGCATCAATCCTTAGGAACCTATGTGATCATAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTATTATGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCAAAGACCTTGAATCACTTAATTCATAAATCTGACACAGCGACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCTACCTGAATCAAAGGTTTACGTTTTAGATGCTTTGAGAAGTATGCTTTCTGTTGTTTCCCTTAGTGATCTTCTACGTGAAGGTAGTGCTGCCAGTGATGCAATTGATACAATGATAAAATTATTGAGCTCAACCAAGGAAGAAACTCAAGCAAAGTCTGCGTCAGCTCTGGCAGGAATTTTTGAAATGAGGAAAGATGTGCGTGAAAGCAACATTGCTGTTAAAACTCTTTGGTCATCCATGAAGCTACTTAATGTTGAATCTGAAATTATCTTAATGGAGTCCTCACGCTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGAGGTAGCTTCTATTGCTAGAGATGCATTATCCTCCCTAGTTGCACTAGCTAGCTCTCCAGTTTTGGAAGTGGCGGAGATGGCAACATGTGCTGTGGCTAATCTTATTTTGGATAGTGAAATTGCTGAGAAAGCTGTTACGGAAGAAGTTATCTTGCCTGCTACCAGAGTATTACGGGAAGGCACAATTTCTGGAAAAACACATGCAGCAGCAGCGATTGCTCGCCTCTTACATTCTAGGAAAGTTGATTATGCTGTAAATGATTGTGTGAATCGTGCTGGTACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTTCTATTAATGGACCTGTTGCCACATCAGAGGCCCTAGAAGCACTTGCCATTTTGTCCAGGTCAGCAGAGACCAGTGCACACAGTAAACCTGCTTGGGCAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTTCTGTCTATTGCTGATTCAACGCCAGTGTTGCAGGATAAAGCTATTGAAATACTATCTCGATTATGTAAGGATCAGCCTTTTGTGTTAGGAGACACTGTTGCTTCTTCCTCTGGATGTATACCTTCTATAGCTAAGAGGATAATTAATTCCGCATCTACAAATGTAAAGGTCAAAATTGGGGGAGCTGCAGTTCTTATTTGTGCTGCTAAAGGTGATGACAACAAGGAAGTCATTAGCATTTGCAGGCATACAGAAGAAGAAGCCAATGATGGTAAATCCAACACTGCCACTGCTATTATATCTGGTGCCAACTTAGCTATATGGTTACTGTGTGTTCTTGCTTGCCATGATGAAAAAAGTAAAATTGCCATAATGGAGGCTGGAGCAATTGAGGTTCTAACTGACAGGATCGCAAATTGTTTCACACAATATAGTCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTATTGTTGGCAATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACTATGAAATCCATACCAGCCCTTGCCAATTTATTGAAGTCAGAGGAAACAGCAAACAGGTATTTTGCTGCACAATCAATATCTAGCCTAGTTTGTAATGGAAGCAGGGGAACACTTCTATCTGTGGCAAATTCTGGGGCGGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCAAATGAGTTTTCTTTGGTGCCATATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGAGCACCATTTTTAGCTCTTGGGATTTTGACTCAGCTTGCCAGAGATTGTCCATCGAATAAACTTGTAATGGCAGAATCTGGGGTTCTAGAGGCACTCACTAAGTATCTTTCACTAGGTCCACAAGATGCAACGGAAGAAGCTGCTACAGATCTGTTGGGAATTCTGTTTAGCAGTGCTGAGATACGGAGGCATGAGTCAGCATTTGGTGCTGTTGCTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGTGCTGCAAAAGCCCTGGAAAGTCTATTCTCTGCTGACCACATTAGCAATGCAGAGACTGCTCGACAAGCTGTTCAACCCTTGGTGGAGATTCTCAATACCGGTTTAGAGAGAGAGCAGCATGCTGCAATTGGTGCATTAGTTAGGTTACTTAGTGAAAACCCTTCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATCCTTTCATCAGATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGAATTCGGTCCACAATGGCTGCTGCGCGCTGTGTTGAACCCCTGGTCTCTCTCCTTGTGTCTGAGTTTAGCCCTGCTCAGCATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGATGATGAGCAATTGGCCGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTAATGTATGGTAGGAACTATGTACTTCATGAGGCCATTTCCAGAGCTCTTGTCAAGTTAGGAAAGGACAGGCCTACTTGTAAAATGGAGATGGTGAAAGCTGGAGTCATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGAATATTGACCAATAATGCTAGCATAGCCAAAGGACCATCAGCTGCTAAAGTGGTTGAACCCCTGTTTTTTATGCTGACAAGACAAGAATTTGGGCCTGATGGACAACACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAGCATCCACAATGTCGTGCTGATTACACATTGACTTCTCACCAAGTTATTGAGCCACTCATCCCTTTGCTTGATTCTCCAATATCGGCAGTGCAACAATTGGTTGCTGAACTTCTCTCACATCTGCTTTTAGAAGAACACCTTCAGAAGGATCCAGTGACACAGCAAGTAATTGGTCCTCTTATACGAGTTCTTGGTTCTGGCATACATATATTACAACAGAGAGCTGTAAAGGCCCTAGTCAGTATTGCTACTGTATGGCCAAATGAAATTGCAAGAGAGGGTGGTGTTATTGAAATTTCAAAAGTGATATTGCAAGCTGACCCTTCAATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTTCCTGTTGCTGTTTTGGTAAGGTTGCTTCGGTCTGGCTCAGAGAGCACGGTTATTGGTGCATTAAATGCTCTTCTTGTGTTAGAATGTGATGATGGAACTAGTGCAGAAGCAATGGCTGAAAGCGGTGCCATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGCGAGGATACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCAGTACCTCTTGGACCCCCAAACCCAAGTACAACAAGCAAGGTTATTAGCAACTTTGGCCCTTGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACACCTGATGCAGTTTCAGCTTGCCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTACTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTCATTAAACTTCTCTTTTCAAATCATACTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGATTTATGGGCTACTGGAACTGTGAATGATGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGGCTGAGAGCAACTGAACCAGCAACACTTACCATTCCACATTTGGTTACGTCCTTGAAGACAGGTTCAGAGGCTACTCAGGAAGCTGCCTTGGATACACTTTTTCTGCTCAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTTTCAAGAGCCCAGTCCATAACAGCTGCAGATGCTATTCCTTTGTTACAGTACTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAGTTTTTATTGCAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAACGTGGTAATAATATGAAGCAATCAGTTGGAAACCCGAGTGTTTATTGTAAGCTTACACTTGGAAACACTCCTCCAAGGCAAACGAAGGTGGTCTCGACTGGCCCAAATCCAGAATGGGATGAGAGTTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAACTTCACATTTCTTGCAAAAATAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACGATCCAGATTGATCGGGTGGTGATGCTGGGAGCAGTATCTGGAGAGTACACTCTGTTGCCGGAAAGTAAAAGTGGCCCCTCAAGGAATTTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6513 0.4333 MLPAFPANRFDLPLTDTLHAFHFHSSSYRSGEGEVFWIDLFGRVKGSKAGDHSDLEHLKGEPWCNVLELLPCDYEERNGDGKVQDSEPPTPHSVLKMGLRERTSSSMEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLKQLLDLIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKNGSVVDSLLTGALKNLSSSTERFWNATIQAGGVDILVKLLTTGQSSTLANVCFLLACMMMEDASVCSKVLTAEATKQLLKLLGPGNDAPVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQIADTLGALASALMIYDDKAESTRASDPLVVEQTLLKQFKPHLPFLVQERTIEALASLYGNPILSLKLANSDAKRLLVGLITMAANEVQDELLKALLTLCNSECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVSLSDLLREGSAASDAIDTMIKLLSSTKEETQAKSASALAGIFEMRKDVRESNIAVKTLWSSMKLLNVESEIILMESSRCLAAIFLSIKENREVASIARDALSSLVALASSPVLEVAEMATCAVANLILDSEIAEKAVTEEVILPATRVLREGTISGKTHAAAAIARLLHSRKVDYAVNDCVNRAGTVLALVSFLDSSINGPVATSEALEALAILSRSAETSAHSKPAWAVLAEFPKSISPIVLSIADSTPVLQDKAIEILSRLCKDQPFVLGDTVASSSGCIPSIAKRIINSASTNVKVKIGGAAVLICAAKGDDNKEVISICRHTEEEANDGKSNTATAIISGANLAIWLLCVLACHDEKSKIAIMEAGAIEVLTDRIANCFTQYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEETANRYFAAQSISSLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSNEFSLVPYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGILTQLARDCPSNKLVMAESGVLEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVAQLVAVLRLGGRAARYSAAKALESLFSADHISNAETARQAVQPLVEILNTGLEREQHAAIGALVRLLSENPSRALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAQHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLMYGRNYVLHEAISRALVKLGKDRPTCKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFFMLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQVIEPLIPLLDSPISAVQQLVAELLSHLLLEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIATVWPNEIAREGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEFYLEVPVAVLVRLLRSGSESTVIGALNALLVLECDDGTSAEAMAESGAIEALLELLRSHQCEDTAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQVQQARLLATLALGDLFQNEGLARTPDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKALNSLFSNFPRLRATEPATLTIPHLVTSLKTGSEATQEAALDTLFLLRQAWSACPAEVSRAQSITAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi681g00005 2170 Gene3D - 666 874 IPR011989 -
Sebi681g00005 2170 Coils Coil 351 371 - -
Sebi681g00005 2170 Gene3D - 1385 1688 IPR011989 -
Sebi681g00005 2170 Gene3D - 104 469 IPR011989 -
Sebi681g00005 2170 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1014 2170 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Sebi681g00005 2170 Gene3D - 875 1190 IPR011989 -
Sebi681g00005 2170 SMART C2_3c 2050 2146 IPR000008 -
Sebi681g00005 2170 Pfam C2 domain 2049 2145 IPR000008 -
Sebi681g00005 2170 Pfam Armadillo/beta-catenin-like repeat 579 619 IPR000225 GO:0005515
Sebi681g00005 2170 Pfam Armadillo/beta-catenin-like repeat 158 188 IPR000225 GO:0005515
Sebi681g00005 2170 SUPERFAMILY ARM repeat 1205 1587 IPR016024 -
Sebi681g00005 2170 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2049 2170 - -
Sebi681g00005 2170 SUPERFAMILY ARM repeat 934 1178 IPR016024 -
Sebi681g00005 2170 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1215 1259 IPR000225 GO:0005515
Sebi681g00005 2170 SUPERFAMILY ARM repeat 117 827 IPR016024 -
Sebi681g00005 2170 SMART arm_5 579 619 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 1332 1371 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 190 230 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 365 414 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 148 189 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 871 913 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 1248 1289 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 1876 1916 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 787 825 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 1458 1498 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 322 363 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 1749 1788 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 1417 1457 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 621 661 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 1203 1246 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 1585 1626 IPR000225 GO:0005515
Sebi681g00005 2170 SMART arm_5 1500 1540 IPR000225 GO:0005515
Sebi681g00005 2170 Gene3D - 1689 2048 IPR011989 -
Sebi681g00005 2170 Gene3D C2 domain 2049 2170 IPR035892 -
Sebi681g00005 2170 ProSiteProfiles C2 domain profile. 2030 2147 IPR000008 -
Sebi681g00005 2170 Gene3D - 1197 1384 IPR011989 -
Sebi681g00005 2170 CDD C2 2051 2141 - -
Sebi681g00005 2170 FunFam Coatomer beta subunit 1635 2048 - -
Sebi681g00005 2170 SUPERFAMILY ARM repeat 1654 2047 IPR016024 -
Sebi681g00005 2170 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1399 1633 - -
Sebi681g00005 2170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2048 2167 IPR035892 -
Sebi681g00005 2170 Gene3D - 470 665 IPR011989 -
Sebi681g00005 2170 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 590 632 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi681g00005 Sebi-Chr681 200890 211353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi681g00005 542 674 U-box Gene Family AT2G23140 40.741 2.46e-12 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi681g00005 - - gmx:100816765 3688.27