Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi680g00013 ATGTCTGATAACTCCGCCTTCAAAATGAACCTTAATGAGTACCTCGTCACTCTTGAGAAGCCCCTTGGCATCCGATTCGCTCTCACCGCCGACGGAAAAATCATTGTCCACTCTCTCACCAAAGGGGGTAATGCGGAGAGGTCCCGGATAATTATGGTGGGTGACACTTTGAAGAAAGCTGGCGATTCCTCTCAGAATAGTCTCGTCGAGATTAAAGACGTTGGAGATACACAGAAGGTGCTCAAGGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCCATACAACTACTGCATAAGATGAATGATCTAGAAATAGTGTTTAATAGAGGTCGAGTTCCTATTGCCACGTGGAACAAGACACTATTGGCATCAAATTTGCAACCTTCTAATGAGAGCTGTGGGAATTCTGGATTTTTGATGTTCAACTCAAAGTTTCTTAAATCAAATGGAAGCAAGTTATTGGTCAATCAAAATCAACATGCCATCACCCATGGTGAGAGACATTTCTTAACTGAACACACAACACAACTTGCTTGTATTTTTACTGAAGAAGAGTATGGAGATGGAGACTGGGGTCATGGAAGTTTTCCACTTGAGGAATATATTCAGGCTCTGGATCGTTCCAAGGATGAGATGTACTATAATCACTCACTTGGTATGCGTTATAGTAAGATTACAGAGCAAATATATGTGGGATCTTGTATACAAACAGAAGATGATGTGGAAACCTTGTCAAAAGTTGAGGGAGTTACTGCTGTGCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGTAAAATCAATCAATGACTCTTGTCAAAGGAATAATATTCTCATGATAAACTATCCTATACGGGAGGGAGATTCTTATGATATGAGAAAAAAACTTCCATTTTGTGTGGGGCTTCTATTACGGTTGCTAAGAAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTAATTGCATACCTACATTGGATGACAGACGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACGTGCAGGCCTGACAGGCCAGCAATTGCTTGGGCAACATGGGATCTTATAGCTATGGTTGAAAGGGGCAAACATGATGGACCTCCCACACATGCCATCACATTTGTGTGGAATGGTCATGAGGGAGAGGATGTAACTTTAGTGGGAGACTTTACTGGAAATTGGAAAGAACCACTCAGGGCAAACCACCAGGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTTAATGGACAATGGAAGCATTCCACCGCATCACCGGCTGAAAGGGATGAAAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTCCGGCCTTCTGTTCAGCACCAGCAAAAA 1467 0.4226 MSDNSAFKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNSLVEIKDVGDTQKVLKEQTSSFSLVLERPTSPFPIQLLHKMNDLEIVFNRGRVPIATWNKTLLASNLQPSNESCGNSGFLMFNSKFLKSNGSKLLVNQNQHAITHGERHFLTEHTTQLACIFTEEEYGDGDWGHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKVEGVTAVLNFQSGTEAENWGINVKSINDSCQRNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGKHDGPPTHAITFVWNGHEGEDVTLVGDFTGNWKEPLRANHQGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDERGNVNNIIVIGETASVRPSVQHQQK 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi680g00013 489 SUPERFAMILY E set domains 392 475 IPR014756 -
Sebi680g00013 489 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 382 478 - -
Sebi680g00013 489 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 10 488 - -
Sebi680g00013 489 CDD E_set_AMPKbeta_like_N 395 474 - -
Sebi680g00013 489 CDD DSP_laforin-like 227 373 IPR045204 GO:0019203
Sebi680g00013 489 ProSiteProfiles Dual specificity protein phosphatase domain profile. 228 390 IPR020422 GO:0006470|GO:0008138
Sebi680g00013 489 Pfam Glycogen recognition site of AMP-activated protein kinase 395 476 IPR032640 -
Sebi680g00013 489 Pfam Dual specificity phosphatase, catalytic domain 238 358 IPR000340 GO:0008138|GO:0016311
Sebi680g00013 489 SUPERFAMILY PDZ domain-like 19 111 IPR036034 GO:0005515
Sebi680g00013 489 Gene3D Immunoglobulins 382 478 IPR013783 -
Sebi680g00013 489 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 218 361 IPR029021 -
Sebi680g00013 489 ProSiteProfiles PDZ domain profile. 15 96 IPR001478 GO:0005515
Sebi680g00013 489 Gene3D Protein tyrosine phosphatase superfamily 221 483 IPR029021 -
Sebi680g00013 489 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 221 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi680g00013 Sebi-Chr680 473795 487320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi680g00013 80 489 Protein tyrosine phosphatase (PTP) family AT3G01510 66.829 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi680g00013 - - gmx:100814503 949.118