Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi680g00009 ATGGGTATTCGTGATAATTTGACTAGTATTGGTGGGGGAGGAAGAGGACCACAAGTAGTTGCACTAGCTTGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTGGATCTCTGTGCAAGAGTCTGTTTAATTGATGAGCATGAGAACATCATCTTCCATTCTTACGTGAAGCCACCAATTCCTGTCACAAACTATAGGTATGAGACAACAGGCATTAGACAAGAACACTTGAGGGATGCAATGCCAATGAGACTAGTTCAGAGGAGGATTCAAGACTTCCTTTGCAATGGAGAACCAATGTGGACTATTCGACCAAGAGGTGGAAAAGCCAGGATTCTTGTGGGTCATGGTTTAGATCATGACCTTTCATGTTTGCAAATAGAATATCGAGCTGAAAAAATAAGGGACACTGCAAAATACCCTCCGCTGATGAAAACAAGCAAGCTGAGCAACTCACTCAAGTATGACATTCAAACCGGGATACAGGATCCTTATGATGATTGTGTTGCAACAATGAGGCTCTACATGAGAATGAGATCACAAGTACACAAAATAGAGGATTACCCTTTGGCATCTGACCCTCAGAACAGGAATAATTTTGCTTCGTGGAGGCAAAGTGAACTTGAAAGAATGACTCCTGAACAAATGCTAGAAATCTCAAGGTCTGACTACTACTGCTGGTGCTTGGATTCCTTTTATAGTCCCTGA 708 0.4251 MGIRDNLTSIGGGGRGPQVVALACKMVGGGSDGSLDLCARVCLIDEHENIIFHSYVKPPIPVTNYRYETTGIRQEHLRDAMPMRLVQRRIQDFLCNGEPMWTIRPRGGKARILVGHGLDHDLSCLQIEYRAEKIRDTAKYPPLMKTSKLSNSLKYDIQTGIQDPYDDCVATMRLYMRMRSQVHKIEDYPLASDPQNRNNFASWRQSELERMTPEQMLEISRSDYYCWCLDSFYSP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi680g00009 235 Gene3D - 16 192 IPR036397 GO:0003676
Sebi680g00009 235 SMART exoiiiendus 18 184 IPR013520 -
Sebi680g00009 235 CDD REX4_like 20 175 IPR037431 GO:0006364|GO:0008408
Sebi680g00009 235 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 17 230 IPR047021 GO:0004527
Sebi680g00009 235 FunFam RNA exonuclease 4 15 194 - -
Sebi680g00009 235 SUPERFAMILY Ribonuclease H-like 32 180 IPR012337 -
Sebi680g00009 235 Pfam Exonuclease 38 140 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi680g00009 Sebi-Chr680 338336 339551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi680g00009 1 232 C2H2 Transcription Factor Family AT3G27970 72.083 9.91e-129 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi680g00009 - - aprc:113862359 454.907