Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi67g00040 ATGAAACCCTTCCTACGTGGCAGCATTCTAATGGACGAAACAGATCAACGGCGGAGATCTTTGACAAGACGATACAGGGTAGTTCGATCGTACGGCAGGGAGAAAGGACTGGGAAAACATCAGTTGAAGCGACATCGTACGCTGCTACCGAGGTGTGTGTCTGTAGAACAGTCTAGGGGTTCGAGTTTGGATTCGGGTGACCCGATTGGTGCCTTGATGGATCCAGGTGCGATGATGAACGAGGGTTCATTTGCTAATGGGAGTAACAATACGGCGCCGTTTAGCTTGGCGGAGATCTGCCAGTTCCCGACGGCGATTAATGGAGGCGGAGGTGGCGGGGGATTGGGGCTTAGGAGACCGCAGTTCGGACATGGTTTGGGGCAGTTTGGGGATTTCTCAACCGGTCTGAACCGGGATGTTAATGGACCGGTTGGACCGGACCAGGGAACAGCGAACCACGGCGTTGGTAATAGGAAGAGGCGTGACTCGGAGGATGATTCGGCTAAGGGTGTGTCCACCAGGAATGGCGTGAATGATGGTGATGGAAAACGACTCAGAGCATCAGGGAACAGGAATGAGGGTGGTGATGGTAAAGTTGAAGGAGAAGCCAGTTCAGGAAAGCTTGCGGAGCAAAGCACTCAACCACCTCCTGATCCTCCTAAGCAAGATTACATCCACGTTCGAGCGAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGAAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAACGCCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCAAGACTGAACTCTGGCATTGAAGCATTTCCTCCTAAAGATTTTGGTCAGCAAACATTTGATCTAGCTGGCATGCCATTTGGTTCACAAGCTACAAGAGAGCATAGCAGAGGCTATTCACCAGAGTGGTTACATATGCAAGTAGGAGTGACTCCCATAAAACAAAACTGGTATACTCAAGGTGTTAAATCCGATGTGCACATCATTTCCATCTTCTACACGAGGCATGGAGTTGTTACTGTTCTCCACAGGACTGCTTCAATTTGTGTTTAA 1167 0.479 MKPFLRGSILMDETDQRRRSLTRRYRVVRSYGREKGLGKHQLKRHRTLLPRCVSVEQSRGSSLDSGDPIGALMDPGAMMNEGSFANGSNNTAPFSLAEICQFPTAINGGGGGGGLGLRRPQFGHGLGQFGDFSTGLNRDVNGPVGPDQGTANHGVGNRKRRDSEDDSAKGVSTRNGVNDGDGKRLRASGNRNEGGDGKVEGEASSGKLAEQSTQPPPDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPPKDFGQQTFDLAGMPFGSQATREHSRGYSPEWLHMQVGVTPIKQNWYTQGVKSDVHIISIFYTRHGVVTVLHRTASICV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi67g00040 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 233 283 IPR011598 GO:0046983
Sebi67g00040 388 Coils Coil 280 300 - -
Sebi67g00040 388 Gene3D - 230 306 IPR036638 GO:0046983
Sebi67g00040 388 MobiDBLite consensus disorder prediction 154 169 - -
Sebi67g00040 388 SMART finulus 239 289 IPR011598 GO:0046983
Sebi67g00040 388 MobiDBLite consensus disorder prediction 128 224 - -
Sebi67g00040 388 Pfam Helix-loop-helix DNA-binding domain 237 284 IPR011598 GO:0046983
Sebi67g00040 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 231 300 IPR036638 GO:0046983
Sebi67g00040 388 MobiDBLite consensus disorder prediction 179 200 - -
Sebi67g00040 388 CDD bHLH_AtBPE_like 223 308 - -
Sebi67g00040 388 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 160 333 IPR024097 GO:0006355
Sebi67g00040 388 FunFam Basic helix-loop-helix transcription factor 230 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi67g00040 Sebi-Chr67 1559547 1563030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi67g00040 73 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 58.848 2.81e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi67g00040 HLH 3.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi67g00040 - - gmx:100784478 392.504