Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi679g00010 ATGACACTTCAGCACGTCACTAAGGCACTCTACTCCTCCGCCTCCATCAACGCCGCCATGGATCCCCGCGTCCGCGCTGCTTACGACGATTGCCTTGAACTCCTCGACGATTCCGTCGACGCCCTCTCTCGCTCCCTCAACTCCATCCTCTCCCCTTCTTCCCCCTCCGTCAGACCGCTCGGGTCCGATGACGTGCTGACGTGGCTCAGCTCCGCGCTAACCAACCAGGAGACGTGTACTGAGGGCTTCGCCGACACGAGCGGCACCGTCAAGGACCAGATGGCAAACAATCTCAAGGACTTGTCAGAACTCGTTAGCAACTGCCTCGCCATTTTCTCTAACGCCGGCCCTGGCGACGACTTCTCCGGCGTCCCCATACAGAACAAGAGACGGTTAATGGCAATGCGACACGATAATTTCCCGAGATGGTTGAGTAAACGAGAGAGGAGATTGCTGAGTTTGCCTGTGTCGGCGATGCAAGCCGATATTATCGTCTCGAAGGACGGTAACGGAACAGTGAAAACCATCGCTGAAGCCATTAAGAAGGTGCCGGAGTACAGTAACCGCCGCATCATTATTTACATCAGGGCAGGAAGGTACGAAGAGGATAATTTGAAGGTAGGAAGGAAGAAAACAAATGTGATGATCATAGGGGACGGCAAGGGCAAGACGGTCATCACAGGCGGCAAAAATGTTATGGATAACAAAACCACCACATTTCACAGCGCATCTTTTGCTGCTAGTGGTCCAGGTTTCATTGCAAGAGACATAACGTTCGAGAACTACGCCGGGCCGGGAAAACATCAAGCAGTGGCCCTCCGTGTCGGCGCAGACCATGCGGTGGTGTACCACTGCAGCATCATTGGGTACCAGGACTCAATGTATGTTCACTCCAACCGTCAATTCTACCGGGAATGTGACATTTACGGCACCGTTGACTTCATATTCGGCAACGCTGCAGTGGTTTTCCAAAACTGCAGCCTCTATGCTCGCAAGCCCATGCCCAGTCAGAAGAACACCATCACGGCCCAAAACAGAAAAGACCCAAATCAAAACACGGGTATGTCCATCCACAACTGTCGGATCCTGGCCACCCCAGATCTGGAACCAGTGAAGGGTAGCTACCCCACCTATCTGGGCCGTCCATGGAAACTATACTCTAGAACCGTCTACATGCAATCTTACATTGGAGATCACGTGCATCCACGTGGATGGTTGGAGTGGAATACATCCAACTTTGCTTTAGACACGTTGTACTATGGTGAATACATGAATTATGGGCCTGGTGCTGCCGTTGGGCAACGGGTAAATTGGTCTGGGTATCGGGTCATCACGTCCACATTGGAAGCAAGTAAATTCACGGTGGCCCAATTCATATCGGGCTCATCCTGGTTGCCCTCCACTGGAGTCGCATTCTTAGCGGGCTTATCCACCTGA 1437 0.5254 MTLQHVTKALYSSASINAAMDPRVRAAYDDCLELLDDSVDALSRSLNSILSPSSPSVRPLGSDDVLTWLSSALTNQETCTEGFADTSGTVKDQMANNLKDLSELVSNCLAIFSNAGPGDDFSGVPIQNKRRLMAMRHDNFPRWLSKRERRLLSLPVSAMQADIIVSKDGNGTVKTIAEAIKKVPEYSNRRIIIYIRAGRYEEDNLKVGRKKTNVMIIGDGKGKTVITGGKNVMDNKTTTFHSASFAASGPGFIARDITFENYAGPGKHQAVALRVGADHAVVYHCSIIGYQDSMYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMPSQKNTITAQNRKDPNQNTGMSIHNCRILATPDLEPVKGSYPTYLGRPWKLYSRTVYMQSYIGDHVHPRGWLEWNTSNFALDTLYYGEYMNYGPGAAVGQRVNWSGYRVITSTLEASKFTVAQFISGSSWLPSTGVAFLAGLST 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi679g00010 478 SUPERFAMILY Pectin lyase-like 157 475 IPR011050 -
Sebi679g00010 478 FunFam Pectinesterase 156 476 - -
Sebi679g00010 478 Pfam Pectinesterase 162 461 IPR000070 GO:0030599|GO:0042545
Sebi679g00010 478 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 6 114 IPR035513 -
Sebi679g00010 478 PANTHER PECTINESTERASE 3 466 - -
Sebi679g00010 478 CDD PMEI-like_3 2 114 - -
Sebi679g00010 478 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 115 IPR035513 -
Sebi679g00010 478 SMART PMEI_2 1 111 IPR006501 GO:0004857
Sebi679g00010 478 ProSitePatterns Pectinesterase signature 2. 308 317 IPR033131 -
Sebi679g00010 478 Pfam Plant invertase/pectin methylesterase inhibitor 5 111 IPR006501 GO:0004857
Sebi679g00010 478 NCBIfam pectinesterase inhibitor domain 4 114 IPR006501 GO:0004857
Sebi679g00010 478 Gene3D - 156 476 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi679g00010 Sebi-Chr679 200010 203649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi679g00010 1 477 Carbohydrate Esterase AT3G49220 71.875 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi679g00010 - - gmx:100808236 802.742