Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi679g00002 ATGGAGCACAATGTATGTCAATCACTTGAAGTTAATGAGCATAAAGATATTTTTCTTGGCCAAGTTGTTTATAACAAAGATGAAGCTTATGCCTTGTACCAAGAACATGCATTCAAAATGGGTTTTAGTGTGAGAAAAGGGAGGGAGTTGTATTATGATATTGAAAAAAAGAACACTCGTTTGAAGGATTATTATTGCTCTAAACAAGGGTTTAAGAACAATGAACTTGTAGGTGAAGTGGCTTATGAAAGAGCAGATTCAAGAACAGATTGCAAAGCTATGGTGAGATTTAATGTGAGTAAGGATGGAGTATGGAAAATTACAAAGTTAGAACTGAATCATAACCATGACTTTGTGCCACAAGAGCAAAGACATTTGCTACGTTCTATGAGAGGCGTATCAAATGCCAAAGGAGGCCTCATTAATTCCATGGTGAATGCAGGTGGAAGCACTTCTATGGAGATTGGTGGGTGTAATAATGTGTCATATCATGAAGTTATTTTCAACCATATGCCTAATAAGAAGTATCAGGTAACATTTGACTCTTCCACTATGATGATTAATTGCAGCTGTCACAAGTTTGATTCTATGGGTATTCTGTGTAGTCATGCCTTGCGAATTTACAACATTAAAGGTATTTTAAAAATACCCGACCAATACTTCTTAAAAAGATGGTCAAAAAGTGCAAGGTCCATGATTTATGAGCACATAAATAGGGGTTCGAAAGAAGATTCTAGCTCTAATGTCATTAACTCAATGACCAATGGTGATGATGCTGGTATTCTTTATCGCAATGCTATTATGAAGTCATTTTATAATCTGGTTTTGGAAACTCAAGAACACAAAGAAACTCAGCAAATTATGTGGAAATTGCTTAATATTGGAGTTGAGCAAGTGCAACAATGTATTGGTAAGCTCAATTTAAATTCAAATGCAGAAACCATTGAGAACAAATTCACTCAAATTGAGGATAATGAATGGGCTGCAATTTTTAATCCTCCTCTTGCAAAGACCAAAGGAATGTCTACTGCTCGCAAGAAGGGGCATTTTGAGAAAAGGAAGCGATCAACCACAAAAACAAAGCAAAATAAAGGTCATGGATTGATTTTGTTTTAA 1116 0.3539 MEHNVCQSLEVNEHKDIFLGQVVYNKDEAYALYQEHAFKMGFSVRKGRELYYDIEKKNTRLKDYYCSKQGFKNNELVGEVAYERADSRTDCKAMVRFNVSKDGVWKITKLELNHNHDFVPQEQRHLLRSMRGVSNAKGGLINSMVNAGGSTSMEIGGCNNVSYHEVIFNHMPNKKYQVTFDSSTMMINCSCHKFDSMGILCSHALRIYNIKGILKIPDQYFLKRWSKSARSMIYEHINRGSKEDSSSNVINSMTNGDDAGILYRNAIMKSFYNLVLETQEHKETQQIMWKLLNIGVEQVQQCIGKLNLNSNAETIENKFTQIEDNEWAAIFNPPLAKTKGMSTARKKGHFEKRKRSTTKTKQNKGHGLILF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi679g00002 371 MobiDBLite consensus disorder prediction 339 366 - -
Sebi679g00002 371 MobiDBLite consensus disorder prediction 342 361 - -
Sebi679g00002 371 Coils Coil 305 325 - -
Sebi679g00002 371 SMART 26again6 187 214 IPR006564 GO:0008270
Sebi679g00002 371 Pfam FAR1 DNA-binding domain 32 119 IPR004330 -
Sebi679g00002 371 ProSiteProfiles Zinc finger SWIM-type profile. 176 212 IPR007527 GO:0008270
Sebi679g00002 371 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 145 IPR031052 GO:0006355
Sebi679g00002 371 Pfam SWIM zinc finger 176 207 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi679g00002 Sebi-Chr679 15231 17387 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi679g00002 FAR1 8.3e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi679g00002 - - tpra:123905334 296.204