Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi678g00009 ATGAGCCGAAACATGAACAATTTCACACCTCTGCCAGGGCTTTGGAGGACTGGTGTTAGAGCCTATGATGCTCACACTTCCAATAATAGTGAATCCAATGAAGTGCCTGTGTTTTACCGACCTCGTTCTACCAGGGCCACAGATGAGAGGAGTTCAGGTGTGCTAGATTCACTGCAGTTCTGGGATGTCAGAACTCCTACAGGACACCACAGTATACCAAATTTTCCAGCACAACAACCACATAGCAGACAACAACAAACTTATGTTCACAATGGGGACATGGGAAGAGGCTTCAACCCCAGGTTCAGAGACATTTTCCTGCAGCCACCCTTAAGATCAACACATCAAACAAGCACACAAGTTCCCCCAGTGGTAGAAAATTCCAAATCAACTGTTTTGAGCAAGCTTAGGAAACAAGTCTATAACCCCACCCCAAAGAGGTTAGTTAGGAAATTGAGCTTATATTATAGAGATAATGCTGTAAAAGATGTGAAAGAGAGGGTGAAAGAAAAGGATGAAGATGGTAAGAGGTGTGCTATTTGCTTGGAAGATTTTGAGCCCAAAGAAGAGGTGATGCTCACACCATGCAACCACATGTTTCATGAGGATTGTATAGTACCTTGGTTAACAAGTAAAGGTCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGAAAGTTAGGGGGAACTCTTCATCCTTCAACAGGAATGATATTGCCAATTTGGAACCTAGTGACCTGATTGCTGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGCAGAATAACTTACTAA 810 0.4296 MSRNMNNFTPLPGLWRTGVRAYDAHTSNNSESNEVPVFYRPRSTRATDERSSGVLDSLQFWDVRTPTGHHSIPNFPAQQPHSRQQQTYVHNGDMGRGFNPRFRDIFLQPPLRSTHQTSTQVPPVVENSKSTVLSKLRKQVYNPTPKRLVRKLSLYYRDNAVKDVKERVKEKDEDGKRCAICLEDFEPKEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVICEKVRGNSSSFNRNDIANLEPSDLIAGELLSILRAMEEAFQLGRITY 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi678g00009 269 CDD RING-H2_SIS3 176 222 - -
Sebi678g00009 269 SUPERFAMILY RING/U-box 169 226 - -
Sebi678g00009 269 SMART ringv_2 177 219 IPR011016 GO:0008270
Sebi678g00009 269 FunFam RING/U-box superfamily protein 162 236 - -
Sebi678g00009 269 Pfam Ring finger domain 177 219 IPR001841 -
Sebi678g00009 269 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Sebi678g00009 269 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 73 220 - -
Sebi678g00009 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 233 IPR013083 -
Sebi678g00009 269 SMART ring_2 178 218 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi678g00009 Sebi-Chr678 180049 181628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi678g00009 127 265 C3H Transcription Factor Family AT3G58720 52.414 1.04e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi678g00009 - - gmx:100802085 379.793