LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi674g00002	ATGAGAAACTCTGAAGCAAGTCAAGTGGCTATGGAGATAGAAGCAAGCAAGCCTTCAGGGAATGGGGTAACCCTGCCAGGGTTGAGTCCTCTGAGTGAGACACTTTGGAGGGAGAAGGCACAAACAGAGTTCATTGGAGATGTCTCAGCAAGGCTCACATGGAAGGATCTGACTGTGATGGTAACTCTTAGCAATGGAGAGACTCAAAATGTTTTGGAGGGTCTAACTGGTTATGCTGAACCTGGTACCTTCACTGCTCTTATGGGTCCTTCAGGTTCAGGAAAATCTACACTTCTTGATGCCCTTTCTAGTCGCCTAGCAGCAAATGCTTTTCTTTCAGGCACCATACTCCTTAATGGTCGCAAAGCCAAACTCTCTTTTGGCACTGCAGCATATGTGACACAAGATGACAACTTAATTGGTACCTTAACTGTACGAGAAACAATTTCATATTCAGCTCGTTTGCGTTTGCCTGATAAGATGTCAAGGTCTGATAAGAGAGCTCTTGTTGAGAGCACCATTGTAGCAATGGGTCTTCAGGATTGTGCTGACACAGTGATTGGGAATTGGCACTTGCGTGGGATAAGTGGTGGAGAAAAGAGAAGGGTTAGCATTGCTTTGGAAATCTTGATGAGGCCAAGATTACTTTTCCTTGATGAACCAACGAGTGGTCTTGACAGTGCTTCAGCTTTCTTTGTGACTCAGACACTACGTGCCTTGGCAAGGGATGGAAGAACAGTGATAGCTTCTATTCATCAACCTAGCAGTGAAGTGTTTGAGCTATTTGACCAACTGTACTTGCTTTCTGGTGGTAAAACTGTTTATTTTGGCCAAGCTTCAGATGCATATGAGTTCTTTGCACAAGCTGGCTTTCCATGCCCTGCTCTGAGGAACCCCTCTGATCATTTCCTTAGGTGCATCAATTCTGACTTTGACAAAGTCAAGGCCACCCTTAAAGGGTCCATGAAACTAAGGTTTGAGGGAAGTGAGGATCCCCTGGATAAGATCACTACTGCTGAAGCTATCAGAACTCTCATTGACTACTACCGCACTTCTCAGCACTCTTATGCTGCAAGACAAAAAGTGGATGATATATCCAGAGTTAAGGGAACAGTGCTTGAAGCAGGAGGAAGTGAGGCTAGTTTCTTGATGCAATCTTACACCTTAACCAAGCGCTCATTCATTAACATGTCAAGGGACTTTGGTTATTACTGGCTTAGGCTTGTAATTTACATTGTGGTCACTATCTGCATTGGAACCATTTACTTGAACGTGGGGACAAGCTACAACTCAATTCTGGCTAGGGGTTCATGTGCATCTTTTGTCTTTGGTTTTGTCACCTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGATATGAAGGTTTTCCAACGGGAGAGGCTTAATGGGCACTATGGTGTCACTGCATTTGTGATCAGTAACACATTATCTGCAATGCCATTCCTTATATTGATCACCTTTCTCTCTGGAACAATTTGTTACTTCATGGTTCGCCTACACCCTGGCTTTTGGCATTACGTGTTCTTTGTGTTGTGTCTTTATGCTAGTGTCACAGTGGTTGAAAGCTTAATGATGGCAATTGCTAGTATTGTCCCCAACTTCCTCATGGGGATCATAATTGGAGCAGGGATTCAGGGCATATTCATGTTGGTCTCTGGCTACTTTAGGCTCCCACATGATATCCCAAAGCCAGTCTGGCGCTATCCAATGTCATACATCAGTTTCCACTTCTGGGCATTACAGGGACAATACCAGAATGATCTTAAAGGATTGATATTTGACAACCAGACACCTGACCTTCCAAAGATACCAGGAGAATACATCCTTGAGAATGTGTTCCAGATTGATGTCAGCAGATCAAAGTGGGTAGATTTAAGTGTAATCTTAAGCATGATTGTCATCTACCGCATTTTCTTCTTCTTCATGATCAAAATCAATGAGGATGTGACCCCATGGGTCAGAGGGTATCTAGCTAGGAGAAGAATGCAGCAGAAGAGTGGAGCCCAGAATACTACTATTGCACCTGATGTCCTCACTCAGTCCCCATCTCTGAGAAACTACATTTCCACTCAAACAAGAAATGGTACTTCCAGAAACGACAATGAATCTTCTTGA	2139	0.4357	MRNSEASQVAMEIEASKPSGNGVTLPGLSPLSETLWREKAQTEFIGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMSRSDKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSEDPLDKITTAEAIRTLIDYYRTSQHSYAARQKVDDISRVKGTVLEAGGSEASFLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTSYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLKGLIFDNQTPDLPKIPGEYILENVFQIDVSRSKWVDLSVILSMIVIYRIFFFFMIKINEDVTPWVRGYLARRRMQQKSGAQNTTIAPDVLTQSPSLRNYISTQTRNGTSRNDNESS	712

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi674g00002	712	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	52	288	IPR027417	-
	Sebi674g00002	712	Pfam	ABC transporter	74	223	IPR003439	GO:0005524
	Sebi674g00002	712	CDD	ABCG_EPDR	49	277	-	-
	Sebi674g00002	712	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	52	295	IPR003439	GO:0005524
	Sebi674g00002	712	FunFam	ABC transporter G family member 11	46	289	-	-
	Sebi674g00002	712	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 11	41	673	-	-
	Sebi674g00002	712	SMART	AAA_5	81	252	IPR003593	GO:0016887
	Sebi674g00002	712	Gene3D	-	46	290	IPR027417	-
	Sebi674g00002	712	ProSitePatterns	ABC transporters family signature.	195	209	IPR017871	GO:0005524\|GO:0016887
	Sebi674g00002	712	Pfam	ABC-2 type transporter	385	591	IPR013525	GO:0016020\|GO:0140359
	Sebi674g00002	712	MobiDBLite	consensus disorder prediction	1	24	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi674g00002	Sebi-Chr674	21536	26873	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi674g00002	82	256	Calmodulin-binding Proteins	AT2G36910	33.871	1.53e-11	66.2