Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi671g00001 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTTGAGGTGGAGTCAAGCGACACCATTGATAACGTGAAAGCTAAGATTCAGGACAAAGAAGGGATTCCACCGGACCAGCAGAGGTTGATCTTCGCCGGTAAACAGCTGGAGGATGGCCGTACCCTCGCCGATTATAACATCCAGAAAGAGTCAACATTGCATCTTGTTTTGAGGCTTCGTGGTGGAATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATATAACCAGGATAAGATGATCTGCCGCAAGTGCTATGCACGTCTACACCCCCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGTTGAGGCCAAAGAAGAAGATCAA 383 0.483 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi671g00001 127 Gene3D - 1 79 - -
Sebi671g00001 127 SUPERFAMILY Zn-binding ribosomal proteins 76 126 IPR011332 GO:0006412
Sebi671g00001 127 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Sebi671g00001 127 SMART ubq_7 1 72 IPR000626 GO:0005515
Sebi671g00001 127 PRINTS Ubiquitin signature 32 52 IPR019956 -
Sebi671g00001 127 PRINTS Ubiquitin signature 53 74 IPR019956 -
Sebi671g00001 127 PRINTS Ubiquitin signature 11 31 IPR019956 -
Sebi671g00001 127 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Sebi671g00001 127 Gene3D - 80 127 IPR038587 -
Sebi671g00001 127 FunFam Ubiquitin-60S ribosomal L40 fusion 1 78 - -
Sebi671g00001 127 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Sebi671g00001 127 SMART Ribosomal_L40e_3 77 127 IPR001975 GO:0003735|GO:0005840|GO:0006412
Sebi671g00001 127 CDD Ubl_ubiquitin 1 76 - -
Sebi671g00001 127 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Sebi671g00001 127 PANTHER UBIQUITIN 1 91 - -
Sebi671g00001 127 Pfam Ribosomal L40e family 78 127 IPR001975 GO:0003735|GO:0005840|GO:0006412
Sebi671g00001 127 FunFam ubiquitin-60S ribosomal protein L40 79 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi671g00001 Sebi-Chr671 104 2316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi671g00001 1 127 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.213 3.86e-92 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi671g00001 K02927 - sspl:121798855 257.299