Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi670g00027 ATGTCAGGAGAAGAAGGAAGCTCTGGAACTGTTAGGAAGCAATCTACATTGTCATTTGGTGGGATGGTAACTGCATCTCCTCTAATTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGCCACTGGTTCACACTTAGAGATCTGGAACTTGCAACTAATCGTTTCTCTGCAGAGAATGTGATTGGTGAAGGTGGATATGGAGTTGTTTACAGGGGCAGACTGATCAATGGATCTGAGGTGGCAGTGAAGAAACTTCTTAATAACTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTGGAGGCTATAGGCCATGTTAGACATAAAAATCTTGTGCGCTTACTTGGATATTGCATAGAAGGAGTTCACAGGCTTGCTTACTTACATGAAGCAATAGAACCAAAAGTTGTTCACCGAGATATAAAGTCTAGTAACATATTGATTGATAATGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATAACTACCAGACTATGTGGCACCAGAATATGCTATACTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCGGTTACTGGAAGGGACCATGTAGACTATACGCGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCTGAGGAAGTTGTGGACTCGAGCCTTGAAGTGAAACCATCAACCCGTGCTTTAAAGCGTGCCCTTCTGGTTGCACTTAGGTGTGTTGATCCTGATGCAGAAAAGAGACCCAAAATGAGTCAGGTTGTGAGGATGCTCGAAGCTGATGAATATCCATTCCGAGAGGATCGAAGGAATAGAAAGAGCCGCACCGCCAGCATGGAAATCGAATCCCTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGGTGAAGGGTTCTGAAGGCCATGTACCTGATGATACTACAACTCAAGGGTCTTAG 1002 0.4391 MSGEEGSSGTVRKQSTLSFGGMVTASPLIGLPEISHLGWGHWFTLRDLELATNRFSAENVIGEGGYGVVYRGRLINGSEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRLAYLHEAIEPKVVHRDIKSSNILIDNEFNAKVSDFGLAKLLDSGESHITTRLCGTRICYTGLLNEKSDIYSFGVLLLEAVTGRDHVDYTRPANEVNLVEWLKMMVGTRRAEEVVDSSLEVKPSTRALKRALLVALRCVDPDAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDISGPSDAEKVKGSEGHVPDDTTTQGS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi670g00027 333 Gene3D Transferase(Phosphotransferase) domain 1 125 309 - -
Sebi670g00027 333 ProSiteProfiles Protein kinase domain profile. 55 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi670g00027 333 SUPERFAMILY Protein kinase-like (PK-like) 39 281 IPR011009 -
Sebi670g00027 333 MobiDBLite consensus disorder prediction 286 333 - -
Sebi670g00027 333 SMART serkin_6 55 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi670g00027 333 Gene3D Phosphorylase Kinase; domain 1 36 124 - -
Sebi670g00027 333 FunFam serine/threonine-protein kinase PBS1-like 31 129 - -
Sebi670g00027 333 MobiDBLite consensus disorder prediction 286 301 - -
Sebi670g00027 333 MobiDBLite consensus disorder prediction 308 323 - -
Sebi670g00027 333 Pfam Protein tyrosine and serine/threonine kinase 57 121 IPR001245 GO:0004672|GO:0006468
Sebi670g00027 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Sebi670g00027 333 PANTHER OS01G0323000 PROTEIN 125 302 - -
Sebi670g00027 333 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Sebi670g00027 333 Pfam Protein kinase domain 125 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi670g00027 333 Coils Coil 75 95 - -
Sebi670g00027 333 FunFam Putative receptor-like serine/threonine-protein kinase 87 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi670g00027 Sebi-Chr670 461722 464634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi670g00027 32 282 Trihelix Transcription Factor Family AT1G70460 40.199 3.50e-62 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Sebi670g00027 Pkinase 6.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi670g00027 - - gmx:100813931 566.229